| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,942,084 – 6,942,188 |
| Length | 104 |
| Max. P | 0.643845 |
| Location | 6,942,084 – 6,942,188 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Shannon entropy | 0.29353 |
| G+C content | 0.47745 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.07 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6942084 104 + 24543557 GAUAUAUACAUAUAUGCAAAUGCCACAAAGGAGAUGCGGAAGCGGAAGCGGUCGCUGAAACGGAAGCGGAAGCGGAUGCUGAAAACGGAGUAGGAGGUGUUAGA .(((((....)))))...((((((..........(((....)))..((((..((((....((....))..))))..))))...............))))))... ( -24.30, z-score = -1.53, R) >droEre2.scaffold_4784 21345352 93 - 25762168 ----GAUAUAUAUAUGCAAAUGCCACAAAGAAGAUGCGGAUCCGGAUGCGGAUGCAGAAGCGGAUGCGAACGCGAAU-------GCGGAGUAGGAGGUGUUAGA ----(((((.....(((.....((.((.......)).)).((((.(((((..((((........))))..)))..))-------.)))))))....)))))... ( -21.10, z-score = -0.41, R) >droSec1.super_2 6869092 91 + 7591821 GAUAUAUACAUAUAUGCAAAUGCCACAAAGGAGAUGCGGAAGCGAAAGCUGAUGCUGAAGCGGAAACGGAA-------------GCGGAGUAGAAGGUGUUAGA .......((((...(((...(((............(((..(((....)))..))).....((....))...-------------)))..)))....)))).... ( -20.70, z-score = -2.32, R) >droSim1.chr3L 6415710 97 + 22553184 GAUAUAUACAUAUAUGCAAAUGCCACAAAGGAGAUGCGGAAGCGGAAGCUGAUGCUGAAGCGGAAACGGAAACGGA-------AGCGGAGUAGGAGGUGUUAGA .(((((....)))))...((((((...........(((..(((....)))..)))....((.....((....))..-------.)).........))))))... ( -22.70, z-score = -2.78, R) >consensus GAUAUAUACAUAUAUGCAAAUGCCACAAAGGAGAUGCGGAAGCGGAAGCGGAUGCUGAAGCGGAAACGGAAGCGGA________GCGGAGUAGGAGGUGUUAGA ..................((((((...........(((..(((....)))..))).....((....))...........................))))))... (-15.01 = -15.07 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:30 2011