| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,941,475 – 6,941,565 |
| Length | 90 |
| Max. P | 0.935603 |
| Location | 6,941,475 – 6,941,565 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 96.06 |
| Shannon entropy | 0.08247 |
| G+C content | 0.58056 |
| Mean single sequence MFE | -37.28 |
| Consensus MFE | -36.21 |
| Energy contribution | -35.59 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6941475 90 - 24543557 CUAGUUCUAGUGGGGUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -39.80, z-score = -1.89, R) >droSim1.chr3L 6415107 90 - 22553184 CUAGUUCUAGUGGGGUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -39.80, z-score = -1.89, R) >droSec1.super_2 6868502 90 - 7591821 CUAGUUCUAGUGGGGUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCAGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...(((((((((.....))))))))))))........ ( -44.40, z-score = -3.48, R) >droYak2.chr3L 7524481 90 - 24197627 CUAGUUCUAGUGGGGUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -39.80, z-score = -1.89, R) >droEre2.scaffold_4784 21344709 90 + 25762168 CUAGUUCUAGUGGGAUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -39.80, z-score = -2.19, R) >droAna3.scaffold_13337 3329598 90 + 23293914 CUAGUUCUAGUGGGGUUCCUGUUGGGGUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGUUGCGGGCACGAGUCUUUU .(((..((((..((...))..))))..)))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -34.30, z-score = -0.79, R) >dp4.chrXR_group8 4238114 90 + 9212921 CUAGUUCUAGUUGGAUUUCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCGGCAUACAGCUGCGGGCACGAGUCUUUU .((((((((((.((....))))))))))))(((...((..((.....))..))...(((((((((.....))))))))))))........ ( -38.70, z-score = -2.50, R) >droPer1.super_38 715224 90 - 801819 CUAGUUCUAGUUGGAUUUCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCGGCAUACAGCUGCGGGCACGAGUCUUUU .((((((((((.((....))))))))))))(((...((..((.....))..))...(((((((((.....))))))))))))........ ( -38.70, z-score = -2.50, R) >droWil1.scaffold_180916 2584673 90 + 2700594 CUAGUUCUAGUUGGGUUUCUGUUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUAAAGCUGCGGGCACGAGUCUUUU ..(((((......(((....((..((((..(......)..))))..).).)))...((((((.((.....)).))))))..))).))... ( -31.40, z-score = -0.56, R) >droVir3.scaffold_13049 7304239 90 - 25233164 CUAGUUCUAGUUGGAUUUCUGUUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU ..(((((.....)))))......((((((.(((...((..((.....))..))...((((((.((.....)).))))))))))))))).. ( -31.80, z-score = -0.73, R) >droMoj3.scaffold_6680 5561448 90 - 24764193 CUAGUUCUAGUUGGAUUCCUGUUGGGAUUGCGUAUCGGUGGUCCUGGGCUCCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU ............((((((.....(((((..(......)..)))))((....))...((((((.((.....)).))))))..))))))... ( -33.40, z-score = -1.21, R) >droGri2.scaffold_15110 18992385 90 + 24565398 CUAGUUCUAGUUGGAUUCCGGUUGGGAUUGCGUAUCGGUGGUCCGGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ ( -35.50, z-score = -1.15, R) >consensus CUAGUUCUAGUGGGAUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCUUUU .(((((((((..((...))..)))))))))(((...((..((.....))..))...((((((.((.....)).)))))))))........ (-36.21 = -35.59 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:30 2011