| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,939,968 – 6,940,067 |
| Length | 99 |
| Max. P | 0.714877 |
| Location | 6,939,968 – 6,940,067 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.17 |
| Shannon entropy | 0.30274 |
| G+C content | 0.34162 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.64 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6939968 99 + 24543557 UAAACAAAUGGCCAAAAAUCAAUAUAUAU------GUAAGUGCACUAAGUAUUUGGCUAUCCCAAAU---CGAAAGAGCAAAACAAUUAGUUUUAUGGCCCCCUAUUU .........((((((((((.(((.....(------((...(((........(((((.....)))))(---(....)))))..)))))).))))).)))))........ ( -19.20, z-score = -1.89, R) >droSim1.chr3L 6413614 103 + 22553184 UAAACAAAUGGCCCAAGAUCAAUAUAUAUAUAU--GUAAGUGCACUAAGUAUUUGGCUAUGCCAAAU---CGAAAGAGCAAAACAAUUGGUUUUAUGGCCCCCUAUUU .........((((.(((((((((.........(--((...(((........((((((...))))))(---(....)))))..))))))))))))..))))........ ( -24.20, z-score = -2.04, R) >droSec1.super_2 6866969 105 + 7591821 UAAACAAAUGGCCCAAGAUCAAUAUAUAUAUAUAUGUAAGUGCACUAAGUAUUUGGCUAUGCCAAAU---CGAAAGAGCAAAACAAUUGGUUUUAUGGCCCACAAUUU .........((((.(((((((((.(((((....)))))..(((........((((((...))))))(---(....))))).....)))))))))..))))........ ( -25.00, z-score = -2.41, R) >droYak2.chr3L 7522900 108 + 24197627 UAAACAAAUGGCUUGUUGGCCAAAGAUCAAUAUAUAUAAGUGCACUAAGUAUUUGGCCACGCCAAAUAAUCGAAAGAGCAAAACAAUUGGUUUUAUAGCCUCGUAUUU ...((...(((((....)))))(((((((((.........(((......((((((((...)))))))).((....))))).....)))))))))........)).... ( -25.14, z-score = -2.13, R) >droEre2.scaffold_4784 21343272 103 - 25762168 UAAACAAAUGGCUUGUUGGCCAAAGAUCAAUAUAUA--AGUGUGCUAAGUAUUUGGCCACGCCAAAU---CGAAAGACCAAAACAAUUGGUUUUACGGCCCCAUAUUU ........((((....((((((((.....((((...--.))))........)))))))).))))..(---((.((((((((.....)))))))).))).......... ( -25.72, z-score = -1.83, R) >consensus UAAACAAAUGGCCCAAGAUCAAUAUAUAUAUAUAUGUAAGUGCACUAAGUAUUUGGCUAUGCCAAAU___CGAAAGAGCAAAACAAUUGGUUUUAUGGCCCCCUAUUU .........((((............................((.......(((((((...)))))))...(....).))(((((.....)))))..))))........ (-14.64 = -14.64 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:29 2011