| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,935,481 – 6,935,554 |
| Length | 73 |
| Max. P | 0.738889 |
| Location | 6,935,481 – 6,935,554 |
|---|---|
| Length | 73 |
| Sequences | 3 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 92.69 |
| Shannon entropy | 0.10064 |
| G+C content | 0.39269 |
| Mean single sequence MFE | -17.61 |
| Consensus MFE | -14.97 |
| Energy contribution | -14.87 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738889 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 6935481 73 - 24543557 GUACCGAUAUGCAUUCUUUUUCGUACCAUCGAUAUCGGUAUCGAUAUCGGAAAAUACACGCAUAGAAGAAGUA .........(((.(((((((.(((....(((((((((....))))))))).......)))...)))))))))) ( -16.40, z-score = -1.36, R) >droSec1.super_2 6862266 73 - 7591821 GCACCGAUAUGCAUUGUUUUUCGUACCAUCGAUAUCGGUAUCGAUAUCGAAAAAUACCCGCGAAGAAGAAGUA (((......))).((.((((((((....(((((((((....))))))))).........)))))))).))... ( -19.22, z-score = -2.38, R) >droSim1.chr3L 6408629 73 - 22553184 GUACCGAUAUGCAUUGUUUUUCGAACCAUCGAUAUCGGUAUCGAUAUCGAAAAAUACCCGCGAAGAAAAAGUA .........(((..((((((((((...(((((((....))))))).))))))))))...)))........... ( -17.20, z-score = -1.96, R) >consensus GUACCGAUAUGCAUUGUUUUUCGUACCAUCGAUAUCGGUAUCGAUAUCGAAAAAUACCCGCGAAGAAGAAGUA .........(((..(((((((((....(((((((....)))))))..)))))))))...)))........... (-14.97 = -14.87 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:28 2011