| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,878,597 – 6,878,689 |
| Length | 92 |
| Max. P | 0.540675 |
| Location | 6,878,597 – 6,878,689 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 90.39 |
| Shannon entropy | 0.19983 |
| G+C content | 0.52066 |
| Mean single sequence MFE | -26.31 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.04 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540675 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 6878597 92 - 24543557 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUU-CACUUCCCGUUCU-CGUCUG-GGCGAGACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.......))))..........((((-.((((((....(.-(...((-(((((.....)))))))...).)..)))))).))))... ( -27.30, z-score = -2.09, R) >droSim1.chr3L 6359050 92 - 22553184 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUU-CACUUCCCGUUCU-CGUCUG-GGCGAGACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.......))))..........((((-.((((((....(.-(...((-(((((.....)))))))...).)..)))))).))))... ( -27.30, z-score = -2.09, R) >droSec1.super_2 6808216 92 - 7591821 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCGGUUU-CACUUCCCGUUCU-CGUCUG-GGCGAGACAAUUGCCCAAAAGUGUUUGAAGUCAAACGCA -.....((((.((((..(((((..((...(((...-......)))....-))...)-))))..)))).)))).....(((((((....))))))). ( -30.00, z-score = -2.95, R) >droYak2.chr3L 7464174 92 - 24197627 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUC-CACUUCCCGUUCU-CGUCUG-GGCGAGACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.......))))..........(((.-.((((((....(.-(...((-(((((.....)))))))...).)..))))))..)))... ( -25.80, z-score = -1.57, R) >droEre2.scaffold_4784 21279777 92 + 25762168 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUC-CACUUCCCGUUCU-CGUCUG-GGCGAGACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.......))))..........(((.-.((((((....(.-(...((-(((((.....)))))))...).)..))))))..)))... ( -25.80, z-score = -1.57, R) >droAna3.scaffold_13337 3262267 94 + 23293914 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUC-CACUUCCUAUUCUCCGUCGGCGGCGAGACAAUUGCCCAGAAGUGUUGGAAGUCAAACGCA -......(((((((((((((((((((..(.(((..-(.((.((...........)).)).)..)))...)..)))))).).)))))..))))))). ( -27.50, z-score = -1.51, R) >dp4.chrXR_group8 4179248 94 + 9212921 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUU-CAGUUCCUGUCCUCGUCGCUGGGCGAAACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.(((((.(((((...((..(.....-(((...))).....)..)).))))).))))).)))).....(((((........))))). ( -24.70, z-score = -1.23, R) >droPer1.super_38 655970 94 - 801819 -GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUU-CAGUUCCUGUCCUCGGCGCUGGGCGAAACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA -.....((((.(((((.(((((...((.((.....-(((...))).....)).)).))))).))))).)))).....(((((........))))). ( -27.80, z-score = -1.38, R) >droWil1.scaffold_180916 2443961 87 + 2700594 UGUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUUCCAAUUUCUGUCCU---------GUGAAACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA .......((((((((((((((((.((..(.((((((((..........)---------).))))))...)..)).))).).)))))..))))))). ( -20.60, z-score = -2.35, R) >consensus _GUUCCGGCGUUUGUUCCGCCUUCUGUUCCUGUUU_CACUUCCCGUUCU_CGUCUG_GGCGAGACAAUUGCCCAAAAGUGUUGGAAGUCAAACGCA ......((((.(((((.((((....................................)))).))))).)))).....(((((........))))). (-19.25 = -19.04 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:17 2011