| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,857,960 – 6,858,051 |
| Length | 91 |
| Max. P | 0.983307 |
| Location | 6,857,960 – 6,858,051 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 87.23 |
| Shannon entropy | 0.24061 |
| G+C content | 0.29696 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -14.82 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6857960 91 - 24543557 ----CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUGCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -17.10, z-score = -2.17, R) >droSim1.chr3L 6335299 91 - 22553184 ----CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -17.10, z-score = -2.65, R) >droSec1.super_2 6787707 91 - 7591821 ----CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -17.10, z-score = -2.65, R) >droYak2.chr3L 7442432 91 - 24197627 ----CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCACACU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -17.10, z-score = -2.66, R) >droEre2.scaffold_4784 21258665 91 + 25762168 ----CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -17.10, z-score = -2.65, R) >droAna3.scaffold_13337 3239079 91 + 23293914 ----UAACAAUGCCACAUCGUUGUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ----......(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... ( -16.40, z-score = -1.79, R) >droVir3.scaffold_13049 7208664 79 - 25233164 CUAUAUACAAUGCCACUUCGUUCUGAUGUUU-CAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUGCUGUAGGCAAAUUU--------------- ..........((((((..(((..(((....)-))((((..((((((.....))))))..)))))))..)).)))).....--------------- ( -14.50, z-score = -1.82, R) >droMoj3.scaffold_6680 5475550 75 - 24764193 ----AUACAAUGGCACUUCGUUCUGAUGUUU-CAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUGCUGUAGGCAAAUUU--------------- ----...(.((((((........(((....)-))((((..((((((.....))))))..)))).)))))).)........--------------- ( -12.00, z-score = -0.75, R) >consensus ____CAACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUUCUUCCGUUCAUUCU ..........(((((((((.....))))).....((((..((((((.....))))))..))))........)))).................... (-14.82 = -15.20 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:15 2011