| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,846,968 – 6,847,024 |
| Length | 56 |
| Max. P | 0.710448 |
| Location | 6,846,968 – 6,847,024 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 98.21 |
| Shannon entropy | 0.02897 |
| G+C content | 0.57589 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -14.75 |
| Energy contribution | -14.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6846968 56 - 24543557 AUUUUCGCGACUUGCCACUUGGCCAUAGCAUACCGCGUAGUGCCAUCCCGCUCGCA ......((((...((....(((((...((.....))...).))))....)))))). ( -14.30, z-score = -1.07, R) >droEre2.scaffold_4784 21252454 56 + 25762168 AUUUUCGCGACUUGCCACUUGGCCACAGCAUACCGCGUAGUGCCAUCCCGCUCGCA ......((((...((....((((.((.((.....))...))))))....)))))). ( -14.60, z-score = -1.16, R) >droYak2.chr3L 7436136 56 - 24197627 AUUUUCGCGACUUGCCACUUGGCCAUAGCAUACCGCGUAGUGGCAUCCCGCUCGCA ......((.....(((....)))....)).....(((.(((((....)))))))). ( -17.30, z-score = -1.51, R) >droSim1.chr3L 6328912 56 - 22553184 AUUUUCGCGACUUGCCACUUGGCCAUAGCAUACCGCGUAGUGCCAUCCCGCUCGCA ......((((...((....(((((...((.....))...).))))....)))))). ( -14.30, z-score = -1.07, R) >consensus AUUUUCGCGACUUGCCACUUGGCCAUAGCAUACCGCGUAGUGCCAUCCCGCUCGCA ......((.....(((....)))....)).....(((.((((......))))))). (-14.75 = -14.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:14 2011