| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,835,359 – 6,835,454 |
| Length | 95 |
| Max. P | 0.630608 |
| Location | 6,835,359 – 6,835,454 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Shannon entropy | 0.43354 |
| G+C content | 0.44561 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -8.14 |
| Energy contribution | -7.95 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6835359 95 + 24543557 -UUUUUGUUUCUCUCUCCUUUUUUUUCCACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU--GCGCUAGCU -.....................(((((...(((((......)))))..)))))..........((((((.((.((........)).)--).)))))). ( -19.60, z-score = -3.04, R) >droSim1.chr3L 6316964 94 + 22553184 -GUUUGGUUCCUAUCUACUUUUUUU-CGACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU--GCGCUAGCU -(.((((..............((((-((..(((((......))))).))))))....)))).)((((((.((.((........)).)--).)))))). ( -20.87, z-score = -2.22, R) >droSec1.super_2 6769519 84 + 7591821 -----------UAUCUUCUUUUUUU-CGACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU--GCGCUAGCU -----------..........((((-((..(((((......))))).))))))..........((((((.((.((........)).)--).)))))). ( -20.30, z-score = -3.31, R) >droYak2.chr3L 7423913 91 + 24197627 UUUGUGGUUUCUCUCUACUUUUUUU-CGACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU--GCGCU---- ...((((((.......((((((...-....(((((......)))))..)))))).....)))))).(((.((.((........)).)--).)))---- ( -14.80, z-score = -0.26, R) >droEre2.scaffold_4784 21238628 89 - 25762168 -UUUUGGCGUCUCUCUCCUUUUUU--CGACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU--GCGAU---- -...(((((((.............--.)))(((((......)))))......))))....(((((....((((........))))..--)))))---- ( -17.54, z-score = -1.08, R) >dp4.chrXR_group8 4133957 88 - 9212921 ------UUUUGUUCCUUUUUCUAUAUGGACUCUCGCCAUCCCCAUCCCAAUCCCCAUACCAUCGCAGGCUCAUUCCCUUUUAUGAUUCUGUGCU---- ------.................(((((.........................)))))....(((((..((((........))))..)))))..---- ( -11.41, z-score = -1.30, R) >consensus _UUUUGGUUUCUCUCUACUUUUUUU_CGACGUGGACAAAACUCCACCUGAAAGUCACCCAAUCGCUGGCUCAUUCCCUUUUAUGAUU__GCGCU____ ..............................(((((......)))))................(((....((((........))))....)))...... ( -8.14 = -7.95 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:13 2011