| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,824,035 – 6,824,186 |
| Length | 151 |
| Max. P | 0.592671 |
| Location | 6,824,035 – 6,824,186 |
|---|---|
| Length | 151 |
| Sequences | 6 |
| Columns | 189 |
| Reading direction | forward |
| Mean pairwise identity | 64.54 |
| Shannon entropy | 0.60046 |
| G+C content | 0.42211 |
| Mean single sequence MFE | -40.11 |
| Consensus MFE | -20.15 |
| Energy contribution | -22.10 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6824035 151 + 24543557 CGUGUGUCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGGUUAUGGCGACUCUAGAUUACACUGGAUUGUGGGGUGACACAUUAUGUUGUGAGUGACAAAGGUUUAAAUAUUAAAAAGUAACAUG-------------------------------------- (((((((((((((..(...((((...((.(((((((.....)))))))...))....)))).)..)))))))).....((((((.(((......)))..((.((.(((......))).)).))...))))))..............)))))-------------------------------------- ( -38.20, z-score = -0.08, R) >droSim1.chr3L 6305753 135 + 22553184 CGUCUGCCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGGUUAUGGCGACUCUAGAUUACACUGGAUUGUGGGG--ACACAUUAUGUUGUGAGUCACAAAGGUUUAAAUAU---------------------------------------------------- .(((.((((((((..(...((((...((.(((((((.....)))))))...))....)))).)..)))))))))))....((((.(((.....((((...--.)))).......)))))))................---------------------------------------------------- ( -44.20, z-score = -2.12, R) >droSec1.super_2 6758347 151 + 7591821 CGUCUGCCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGGUUAUGGCGACUGUAGAUUACACUUGAUUGUGGGGGGACACAUUAUGUUGUGAGUCACAAAUGUUUAAAUAUUAAAAAGUAACAUG-------------------------------------- .(((.((((((((..(...((((...((.(((((((.....)))))))...))....)))).)..)))))))))))(((.((((.(((......(((.(....).)))......)))))))))).(((((...............))))).-------------------------------------- ( -43.66, z-score = -1.29, R) >droYak2.chr3L 7411969 189 + 24197627 CAUCUGCCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGUUUAUGGCGACUUUGGAUUACACUCGAUUUCGGGGACACAUUAUGUGUUGUGAGUUUGUGAGGUUCAGGUGUUUUUAGAAAUAUUUAUUAAUGCUGUUUUGGGGGGAGUCACAAAUUAAACAUG ....((((((((((((((........((.(((((((.....)))))))...))..))))))).....)))))))........((((.((((....))))(((((.....)))))))))((((((((..(((.((((((..((((....))))..))))))........)))..))))))))........ ( -49.60, z-score = 0.01, R) >droEre2.scaffold_4784 21226912 136 - 25762168 CAUCUGCCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGUUUAAGGCGACUUUAGAUUACACUGGAUUGUGGGG--ACACA----GGCGU---UCAGGUAUUUUUAGAUAAAGUCAAUC-------------------------------------------- .....(((..(((.((....(((...((.(((((((.....)))))))...))....))).)).)))...)))(((((((...(((.((((((((((...--.))))----...))---)))))))........)))))))....-------------------------------------------- ( -42.60, z-score = -2.09, R) >droAna3.scaffold_13337 3208552 123 - 23293914 CAGCUGGUGUAACUAGAAAUUGGUCAGC---------------AAAUGAAAGUGGUUUUAGCCUAUUUCGGAGAGAUUUUG--UAAUUUUUUUUGUUUAG--AGAUAUCAUGACUUUAAGAAUUUAUUUCCCGAUUUCGAGC----------------------------------------------- ..(((((.....)).((((((((..((.---------------((((.(((((.((..((.((((..(..((((((((...--.))))))))..)..)))--.).))..)).)))))....)))).))..)))))))).)))----------------------------------------------- ( -22.40, z-score = 0.38, R) >consensus CAUCUGCCGUAGCUGGAAAUUGGUCAGCGUGUUUGCAAGUGGCAAACGAAAGUGGUUCCAGCCUGGUUAUGGCGACUUUAGAUUACACUGGAUUGUGGGG__ACACAUUAUGUUGUGAGUCACAAAGGUUUAAAUAUUAAAAA______________________________________________ ....((((((((((((((........((.(((((((.....)))))))...))..))))))).....)))))))........(((((......((((......))))......)))))....................................................................... (-20.15 = -22.10 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:10 2011