| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,811,775 – 6,811,876 |
| Length | 101 |
| Max. P | 0.720870 |
| Location | 6,811,775 – 6,811,876 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 85.10 |
| Shannon entropy | 0.20663 |
| G+C content | 0.52897 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -24.29 |
| Energy contribution | -24.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6811775 101 + 24543557 GUCUUCGGGCCAUCGUUUGCAUUGGCGUUGGCGUCGUUGUUGGCAACGGUAGCAUCCUCCUCAUCUUUUGGCCCAAUCCCAGUACCAAUUCCGUACCAAAA ......((((((..((..(((.(((((....))))).)))..))...((......))...........)))))).......((((.......))))..... ( -26.60, z-score = -0.81, R) >droSim1.chr3L 6293287 100 + 22553184 GUCUUCGGGCCAUCGUUUGCAUUGGCGUUGGCGUCGUUGUUGGCAACAGUAGCAUCCUCCUCAUCUUUUGGCCCAAUCCCCAUACCAAUUCCCUACCAAA- ......((((((...........((((....))))(((((((....)))))))...............))))))..........................- ( -24.60, z-score = -1.08, R) >droYak2.chr3L 7398467 83 + 24197627 GUCUUCGGGCCAUCGUUUGCAUUGGCGUUGGCGUCGUUGUUGGCAACGGUAGCAUCCUCCACAUCUUUUGGCCCAAUCCCAAU------------------ ......((((((..((..(((.(((((....))))).)))..))...((.((....))))........)))))).........------------------ ( -25.10, z-score = -1.09, R) >consensus GUCUUCGGGCCAUCGUUUGCAUUGGCGUUGGCGUCGUUGUUGGCAACGGUAGCAUCCUCCUCAUCUUUUGGCCCAAUCCCAAUACCAAUUCC_UACCAAA_ ......((((((...........((((....))))(((((((....)))))))...............))))))........................... (-24.29 = -24.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:03 2011