| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,475,361 – 4,475,423 |
| Length | 62 |
| Max. P | 0.815082 |
| Location | 4,475,361 – 4,475,423 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 95.81 |
| Shannon entropy | 0.07388 |
| G+C content | 0.28387 |
| Mean single sequence MFE | -10.38 |
| Consensus MFE | -9.78 |
| Energy contribution | -9.82 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4475361 62 + 23011544 GUUAUCUUUAUUUGCUUUAAUAGAGGUGAUUACUUUCUUGAAAGUUGCUCUUUAACCGUUUA ((((((((((((......)))))))))))).(((((....)))))................. ( -10.40, z-score = -1.68, R) >droSim1.chr2L 4402558 62 + 22036055 GUUAUCUUUAUUUGCUUUAAUAGAGGUGAUUACUUUCUUGAAAGUUGCUCUUUAACCGUUUA ((((((((((((......)))))))))))).(((((....)))))................. ( -10.40, z-score = -1.68, R) >droSec1.super_5 2574251 62 + 5866729 GAUAUCUUUAUUUGCUUUAAUAGGGGUGAUUACUUUCUUGAAAGUAGCUUUUUAACCGUUUA ..((((((((((......)))))))))).(((((((....)))))))............... ( -10.30, z-score = -1.08, R) >droYak2.chr2L 4511510 62 + 22324452 GUUAUCUUUAUUUGCUUUAAUAGAGGUGAUUACUUUCAUGAAAGUUGCUCUUUAACCAUUUA ((((((((((((......)))))))))))).(((((....)))))................. ( -10.40, z-score = -1.62, R) >droEre2.scaffold_4929 4565154 62 + 26641161 GUUAUCUUUAUUUGCUUUAAUAGAGGUGAUUACUUUCUUGAAAGUUGCUCUUUAACCAUUUA ((((((((((((......)))))))))))).(((((....)))))................. ( -10.40, z-score = -1.72, R) >consensus GUUAUCUUUAUUUGCUUUAAUAGAGGUGAUUACUUUCUUGAAAGUUGCUCUUUAACCGUUUA ((((((((((((......)))))))))))).(((((....)))))................. ( -9.78 = -9.82 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:32 2011