| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,781,133 – 6,781,232 |
| Length | 99 |
| Max. P | 0.523112 |
| Location | 6,781,133 – 6,781,232 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.63 |
| Shannon entropy | 0.23338 |
| G+C content | 0.33658 |
| Mean single sequence MFE | -15.94 |
| Consensus MFE | -13.74 |
| Energy contribution | -13.58 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6781133 99 - 24543557 AAUAAC-AACAGCGAGUGAGUAAAAAACAAAAAACAAAAAAAAAACGCUGGUAUUUAAAUUUCAAAUGUCGAAGCGAAGGAAGAAAUCCUGUUUCUGCUG ......-..(((((.((.........))...((((..........(((((..((((.......))))..)..)))).((((.....)))))))).))))) ( -14.10, z-score = -0.33, R) >droSec1.super_2 6715535 92 - 7591821 AAUAAC-AACAGCGAGUGAGUAAAAAAC-------AAAAAAGAAACGCUGGUAUUUAAAUUUCAAAUGUCGAAGCGAAGGAAGAAAUCCUGUUUCUGCUG ......-..((((..((.........))-------.....((((((((((..((((.......))))..)..)))..((((.....)))))))))))))) ( -17.10, z-score = -1.20, R) >droSim1.chr3L 6260669 90 - 22553184 AAUAAC-AACAGCGAGUGAGUAAAAAAC---------AAAAAAAACGCUGGUAUUUAAAUUUCAAAUGUCGAAGCGAAGGAAGAAAUCCUGUUUCUGCUG ......-..(((((((............---------........(((((..((((.......))))..)..)))).((((.....))))..))).)))) ( -14.10, z-score = -0.33, R) >droYak2.chr3L 7367087 97 - 24197627 AAUAAC-AACAGCGAGUGAGUAAAAAUACAAAA--ACGAAAAAAACGCUGGUAUUUAAAUUUCAAAUGUCGAAGCGAAGGAAAAAAUCCUGUUUCUGCUG ......-..((((((.((((...((((((....--.((.......))...))))))....))))....))(((((..((((.....))))))))).)))) ( -16.60, z-score = -1.24, R) >droEre2.scaffold_4784 21183762 80 + 25762168 AAUAACAAACAGCGAGUUAGUAAAAAA-------------------ACUGGCAUUUAAAUUUCAAAUGUCGAAGCGAAGGAA-AAAUCCUGUUUCUGCUG .........(((((((((........)-------------------)))(((((((.......)))))))(((((..((((.-...)))))))))))))) ( -17.80, z-score = -2.53, R) >consensus AAUAAC_AACAGCGAGUGAGUAAAAAAC_______A_AAAAAAAACGCUGGUAUUUAAAUUUCAAAUGUCGAAGCGAAGGAAGAAAUCCUGUUUCUGCUG .........(((((...................................(((((((.......)))))))(((((..((((.....)))))))))))))) (-13.74 = -13.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:59 2011