| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,773,724 – 6,773,817 |
| Length | 93 |
| Max. P | 0.558999 |
| Location | 6,773,724 – 6,773,817 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Shannon entropy | 0.44334 |
| G+C content | 0.33784 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -9.89 |
| Energy contribution | -9.28 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558999 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 6773724 93 - 24543557 AUGGUUUUAUGCGUUUUGGCAUAGAGUUCCAGCCAGAGUCGAAG-----------GAGAGUUGGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .(((((((((((......))))))))..))).......((....-----------)).(((((((.(((((.........)))))....)))))))........ ( -17.00, z-score = -0.79, R) >droSim1.chr3L 6255249 93 - 22553184 AUGGUUUUAUGCGUUUUGGCAUAGAGUUCCAGCCAGAGUCGAAG-----------GAUAGUUGGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .(((((((((((......))))))))..)))..........((.-----------.(((((((((.(((((.........)))))....)))))))))..)).. ( -18.40, z-score = -1.38, R) >droSec1.super_2 6710123 93 - 7591821 AUGGUUUUAUGCGUUUUGGCAUAGAGUUCCAGCCAGAGUCGAAG-----------GAGAGUUGGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .(((((((((((......))))))))..))).......((....-----------)).(((((((.(((((.........)))))....)))))))........ ( -17.00, z-score = -0.79, R) >droYak2.chr3L 7361432 93 - 24197627 AUGGUUUUAUGCGUUUUGGCAUAGAGUUCCAGCCAGAGUCGAAG-----------GAGAGUUCGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .(((((((((((......))))))))..)))(((((.((((((.-----------.....)))))).))).))(((((((....)))))))............. ( -20.00, z-score = -2.14, R) >droEre2.scaffold_4784 21178105 93 + 25762168 AUGGUUUUAUGCGUUUUGGCAUAGAGUUCGAGCCAGAGUCGAAG-----------GAGAGUUCGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .((((((..(((..((((((...(....)..))))))((((((.-----------.....)))))).....)))...))))))..................... ( -18.50, z-score = -1.35, R) >droAna3.scaffold_13337 3158815 104 + 23293914 AUGGCUUUAUGCGUUUUGGCAUAGAGCUCGGGCCGGAGUCGAAGCGGAGUCGCCUGCGAGUUCGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU ...(((((((((......)))))))))((((((((.((.(((.......))).)).)).)))))).(((((...((((((....)))))))))))......... ( -27.90, z-score = -0.83, R) >dp4.chrXR_group8 5150827 101 - 9212921 AUGGUUUUAUGCGUUUUGGCAUAGAGUUGGAGCCGAGAGUCGGG---AGAGUCGAGUACGAGAGUAUUCGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .((((((..(((((((..((.....))..))))...((.((...---.)).))((((((....))))))..)))...))))))..................... ( -27.30, z-score = -3.38, R) >droPer1.super_38 261074 101 + 801819 AUGGUUUUAUGCGUUUUGGCAUAGAGUUGGAGCCGAGAGUCGGG---AGAGUCGAGUACGAGAGUAUUCGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .((((((..(((((((..((.....))..))))...((.((...---.)).))((((((....))))))..)))...))))))..................... ( -27.30, z-score = -3.38, R) >droVir3.scaffold_13049 18120130 73 + 25233164 AUGGCUUUAUGCGUUUUGGCAUAGAGCUUGAGCUGGCAAC-------------------------------GCAAAUAAAUCAAUUGAUUUCAAUUAUAAUUAU ..((((((((((......))))))))))...((.(....)-------------------------------)).........(((((....)))))........ ( -18.60, z-score = -1.92, R) >droGri2.scaffold_15110 5735918 73 - 24565398 AUGGCUUUAUGCGUUUUGGCAUAGAGUUCGAGUUGGCAAC-------------------------------GCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU ..((((((((((......))))))))))..(((((((...-------------------------------))(((((((....))))))))))))........ ( -13.30, z-score = -1.04, R) >consensus AUGGUUUUAUGCGUUUUGGCAUAGAGUUCGAGCCAGAGUCGAAG___________GAGAGUUCGAUAUUGAGCAAAUAAAUCAAUUUAUUUCAAUUAUAAUUAU .(((((((((((......)))))))......))))....................................(.(((((((....))))))))............ ( -9.89 = -9.28 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:58 2011