| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,766,610 – 6,766,731 |
| Length | 121 |
| Max. P | 0.882476 |
| Location | 6,766,610 – 6,766,731 |
|---|---|
| Length | 121 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 92.30 |
| Shannon entropy | 0.13415 |
| G+C content | 0.41258 |
| Mean single sequence MFE | -27.98 |
| Consensus MFE | -20.22 |
| Energy contribution | -19.98 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6766610 121 + 24543557 GUGGUUCGCCCCAAGUUGCGCAAGUCCUCCUUUU--CCCCGUUGAGGAGCACUCGUAUAUACAUACAUAUAUAUAAAAUAUGUAGAAA-CCAAAUUGUUUCUGUACCGCGCUUACAUAUAUCAG .(((......))).((.((((.(((.((((((..--.......)))))).))).(((((....(((((((.......)))))))((((-(......)))))))))).))))..))......... ( -29.00, z-score = -3.11, R) >droEre2.scaffold_4784 21170852 115 - 25762168 GUGGUUCGCCCCAAGUUGCGCAAGUCCUCCUUUU--CCCCGUUGAGGAGCACUGGUAUAUACAUA------UAUAAAAUAUGUAGAAA-CAAAAUUGUUUCUGUACCGCGCUUACAUACAUCAG .(((......))).((.((((.(((.((((((..--.......)))))).)))((((((((((((------(.....)))))))((((-((....))))))))))))))))..))......... ( -35.20, z-score = -4.71, R) >droYak2.chr3L 7354127 120 + 24197627 GUGGUUCGCCCCAAGUUGCGCAAGUCCUCCUUUUUUCCCCGUUGAGAAGCACUGCUAUAUACAUA----UAUAUAAAAUAUGUAGAAAAUAAAAUUGUUUCUGUAGCGCGCUUACAUACAUCAG .(((......))).((.((((.(((.((.(((...........))).)).)))((((((((((((----(.......)))))))((((.........))))))))))))))..))......... ( -22.80, z-score = -1.20, R) >droSec1.super_2 6703150 119 + 7591821 GUGGUUCGACCCAAGUUGCGCAAGUCCUCCUUUU--CACCGUUGAGGAGCACUCGUAUAUACAUA--CAAAUAUAAAAUAUGUAAAAA-CCAAAUUGUUUCUGUACCGCGCUUACAUACAUCAG (((((..((..(((.(((.((.(((.((((((..--.......)))))).))).))...((((((--...........))))))....-.))).)))..))...)))))............... ( -23.80, z-score = -1.53, R) >droSim1.chr3L 6248119 119 + 22553184 GUGGUUCGCCCCAAGUUGCGCAAGUCCUCCUUUU--CCCCGUUGAGGAGCACUCGUGUAUACAUA--UAUAUAUAAAAUAUGUAGAAA-CCAAAUUGUUUCUGUACCGCGCUUACAUACAUCAG (((((.(.........(((((.(((.((((((..--.......)))))).))).)))))((((((--(.........)))))))((((-(......))))).).)))))............... ( -29.10, z-score = -2.96, R) >consensus GUGGUUCGCCCCAAGUUGCGCAAGUCCUCCUUUU__CCCCGUUGAGGAGCACUCGUAUAUACAUA___AUAUAUAAAAUAUGUAGAAA_CCAAAUUGUUUCUGUACCGCGCUUACAUACAUCAG .(((......))).((.((((.(((.((((((...........)))))).))).(((((((((((.............))))))((((.(......)))))))))).))))..))......... (-20.22 = -19.98 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:56 2011