Locus 6445

Sequence ID dm3.chr3L
Location 6,762,396 – 6,762,493
Length 97
Max. P 0.997207
window8874

overview

Window 4

Location 6,762,396 – 6,762,493
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 87.84
Shannon entropy 0.20756
G+C content 0.39529
Mean single sequence MFE -29.08
Consensus MFE -23.85
Energy contribution -24.09
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -3.47
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.06
SVM RNA-class probability 0.997207
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 6762396 97 - 24543557
--GACGUCUAGACGUCUUCUAGAGGCUGAGAUUAGAGAUUGGUAUUAGGAAUUUGGUGUUUUUGGCUUUUUGGAUUUUUCGAUUUCUGAUUUCGGUUUC
--(((((....))))).....(((((((((((((((((((((.....((((((..(.((.....))...)..))))))))))))))))))))))))))) ( -33.60, z-score =  -4.68, R)
>droSim1.chr3L 6243843 95 - 22553184
---GAGUCUAGACGUCUUCUAGAGGCUGGGAUUAGAGAUUGGUAUUAGGAAUUUGGUG-UUUUGGCGUUUUGGAUUUUUCGAUUUCUGAUUUCGGUUUC
---...((((((.....))))))(((((..((((((((((((.....((((((..(((-(....)))..)..))))))))))))))))))..))))).. ( -28.50, z-score =  -3.11, R)
>droSec1.super_2 6698910 95 - 7591821
---GAGUCUAGACGUCUUCUAGAGGCUGGGAUUAGAGAUUGGUAUUAGGAAUUUGGUG-UUUUGGCGUUUUGGAUUUUUCGAUGUCUGAUUUCGGUUUC
---...((((((.....))))))(((((..((((((.(((((.....((((((..(((-(....)))..)..))))))))))).))))))..))))).. ( -27.00, z-score =  -2.50, R)
>droYak2.chr3L 7349595 90 - 24197627
GGUUAGUCUAGACGUCUUCUAGAGGCUGGGAUUAGAGAUUGGUAUUAGG-A--------AUUUGGUGUUUUGGAUAUUUCGAUUUCUGAUUUCGGUUUC
......((((((.....))))))(((((..((((((((((((((((..(-(--------((.....))))..)))))..)))))))))))..))))).. ( -28.80, z-score =  -3.93, R)
>droEre2.scaffold_4784 21166385 91 + 25762168
GGAUUGUCUAGACGUCUUCUAGAGGCUGGGAUUAGAGAUUGGUAUUAGGAA--------AUUGGGUGUUUUGGAUUUUUCGAUUUCUGAUUUCGGUUUC
......((((((.....))))))(((((..((((((((((((.(((..(((--------((.....))))).)))...))))))))))))..))))).. ( -27.50, z-score =  -3.13, R)
>consensus
___GAGUCUAGACGUCUUCUAGAGGCUGGGAUUAGAGAUUGGUAUUAGGAAUUUGGUG_UUUUGGCGUUUUGGAUUUUUCGAUUUCUGAUUUCGGUUUC
......((((((.....))))))(((((((((((((((((((.(((..(((................)))..)))...))))))))))))))))))).. (-23.85 = -24.09 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:55 2011