| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,759,631 – 6,759,687 |
| Length | 56 |
| Max. P | 0.990504 |
| Location | 6,759,631 – 6,759,687 |
|---|---|
| Length | 56 |
| Sequences | 12 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 93.69 |
| Shannon entropy | 0.13212 |
| G+C content | 0.44673 |
| Mean single sequence MFE | -17.58 |
| Consensus MFE | -14.43 |
| Energy contribution | -14.40 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6759631 56 + 24543557 CAAGUGAAAUGCUUG--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAGCU (((((.....)))))--...((((((((((((((...)))))).)).))))))..... ( -18.40, z-score = -3.13, R) >droSim1.chr3L 6241054 56 + 22553184 CAAGUGAAAUGCUUG--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAGCU (((((.....)))))--...((((((((((((((...)))))).)).))))))..... ( -18.40, z-score = -3.13, R) >droSec1.super_2 6696126 56 + 7591821 CAAGUGAAAUGCUUG--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAGCU (((((.....)))))--...((((((((((((((...)))))).)).))))))..... ( -18.40, z-score = -3.13, R) >droYak2.chr3L 7346744 56 + 24197627 CAAGUGAAAUGCUUG--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU (((((.....)))))--...((((((((((((((...)))))).)).))))))..... ( -18.40, z-score = -3.63, R) >droEre2.scaffold_4784 21163594 56 - 25762168 CAAGUGAAAUGCUUG--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU (((((.....)))))--...((((((((((((((...)))))).)).))))))..... ( -18.40, z-score = -3.63, R) >droAna3.scaffold_13337 3142921 54 - 23293914 CAAGUGAAAUGCUUG--AAAACCGCAGCAAAUUCGUCGAAUUUGCCAUGCGGUGAG-- (((((.....)))))--...((((((((((((((...))))))))..))))))...-- ( -20.40, z-score = -4.10, R) >dp4.chrXR_group8 4043920 58 - 9212921 CAAGUGAAAUGCUUGUGAAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU (((((.....))))).....((((((((((((((...)))))).)).))))))..... ( -17.90, z-score = -3.14, R) >droPer1.super_38 522824 58 + 801819 CAAGUGAAAUGCUUGUGAAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU (((((.....))))).....((((((((((((((...)))))).)).))))))..... ( -17.90, z-score = -3.14, R) >droWil1.scaffold_180916 421512 56 + 2700594 CAAGCGAAAUGCUUC--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAGCU ..((((((....)))--...((((((((((((((...)))))).)).))))))..))) ( -17.40, z-score = -2.37, R) >droVir3.scaffold_13049 18140247 56 - 25233164 CGGGCGAAAUGCUUC--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU .((((.....)))).--...((((((((((((((...)))))).)).))))))..... ( -16.00, z-score = -1.51, R) >droMoj3.scaffold_6680 19394774 56 - 24764193 CAACCGAAAUGCUAC--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU ...............--...((((((((((((((...)))))).)).))))))..... ( -14.60, z-score = -2.56, R) >droGri2.scaffold_15110 5752882 56 + 24565398 CAACCGAAAUGCUUC--AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU .....(((....)))--...((((((((((((((...)))))).)).))))))..... ( -14.80, z-score = -2.38, R) >consensus CAAGUGAAAUGCUUG__AAAACCGCAGGAAAUUCGUCGAAUUUGCCAUGCGGUAAACU .((((.....))))......((((((((((((((...)))))).)).))))))..... (-14.43 = -14.40 + -0.03)
| Location | 6,759,631 – 6,759,687 |
|---|---|
| Length | 56 |
| Sequences | 12 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 93.69 |
| Shannon entropy | 0.13212 |
| G+C content | 0.44673 |
| Mean single sequence MFE | -16.28 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.49 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6759631 56 - 24543557 AGCUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -17.80, z-score = -3.89, R) >droSim1.chr3L 6241054 56 - 22553184 AGCUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -17.80, z-score = -3.89, R) >droSec1.super_2 6696126 56 - 7591821 AGCUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -17.80, z-score = -3.89, R) >droYak2.chr3L 7346744 56 - 24197627 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -15.40, z-score = -3.04, R) >droEre2.scaffold_4784 21163594 56 + 25762168 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -15.40, z-score = -3.04, R) >droAna3.scaffold_13337 3142921 54 + 23293914 --CUCACCGCAUGGCAAAUUCGACGAAUUUGCUGCGGUUUU--CAAGCAUUUCACUUG --...((((((..((((((((...))))))))))))))...--((((.......)))) ( -16.40, z-score = -3.25, R) >dp4.chrXR_group8 4043920 58 + 9212921 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUUCACAAGCAUUUCACUUG .(...((((((.((.((((((...))))))))))))))...).((((.......)))) ( -15.50, z-score = -3.12, R) >droPer1.super_38 522824 58 - 801819 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUUCACAAGCAUUUCACUUG .(...((((((.((.((((((...))))))))))))))...).((((.......)))) ( -15.50, z-score = -3.12, R) >droWil1.scaffold_180916 421512 56 - 2700594 AGCUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--GAAGCAUUUCGCUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -17.80, z-score = -2.60, R) >droVir3.scaffold_13049 18140247 56 + 25233164 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--GAAGCAUUUCGCCCG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -15.40, z-score = -1.74, R) >droMoj3.scaffold_6680 19394774 56 + 24764193 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--GUAGCAUUUCGGUUG .(((.((((((.((.((((((...))))))))))))))...--..))).......... ( -15.10, z-score = -1.74, R) >droGri2.scaffold_15110 5752882 56 - 24565398 AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU--GAAGCAUUUCGGUUG .((((((((((.((.((((((...))))))))))))))...--.)))).......... ( -15.40, z-score = -1.66, R) >consensus AGUUUACCGCAUGGCAAAUUCGACGAAUUUCCUGCGGUUUU__CAAGCAUUUCACUUG .((((((((((.((.((((((...))))))))))))))......)))).......... (-14.40 = -14.49 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:54 2011