| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,744,458 – 6,744,535 |
| Length | 77 |
| Max. P | 0.844708 |
| Location | 6,744,458 – 6,744,535 |
|---|---|
| Length | 77 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 69.42 |
| Shannon entropy | 0.60071 |
| G+C content | 0.51441 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -12.99 |
| Energy contribution | -12.26 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6744458 77 + 24543557 CUCAUCUUGGGGCACUUGCACUACUUGCAAAUCAGAGUAGACUGGCUCCUCCAGGGGCACAAUA-UACUGCUCCAUUU----------------- .......((((((..(((((.....))))).....((((...(((((((....))))).))...-))))))))))...----------------- ( -25.20, z-score = -2.77, R) >droEre2.scaffold_4784 21142531 77 - 25762168 CUCAUCUUGGGGCACUUGCACUACCUGCAGAUCGGAGUAGACGGGCUCCUCCAGCGGCACAAUA-UACUGCUCCAUUU----------------- .......(((((((.(((((.....)))))...(((((......)))))...............-...)))))))...----------------- ( -20.50, z-score = -0.45, R) >droYak2.chr3L 7329505 77 + 24197627 CUCAUCUUGGGGCACUUGCACUACCUGCAGAUCGGAGUAGACGGGCUCCUCCAGCGGCACAAUA-UACUGCUCCAUUU----------------- .......(((((((.(((((.....)))))...(((((......)))))...............-...)))))))...----------------- ( -20.50, z-score = -0.45, R) >droSec1.super_2 6681174 77 + 7591821 CUCAUCUUGGGGCACUUGCACUACCUGCAAAUCGGAGUAGACGGGCUCCUCCAGGGGCACAAUA-UACUGCUCCAUUU----------------- .......((((((..(((((.....))))).....((((....((((((....))))).)....-))))))))))...----------------- ( -24.60, z-score = -2.04, R) >droSim1.chr3L 6226342 77 + 22553184 CUCAUCUUGGGGCACCUGCACUACCUGCAAAUCGGAGUAGACGGGCUCCUCCAGGGGCACAAUA-UACUGCUCCAUUU----------------- .......(((((((.(((..(((((((.....))).)))).)))(((((....)))))......-...)))))))...----------------- ( -24.90, z-score = -1.78, R) >droAna3.scaffold_13337 3126575 75 - 23293914 --CGUCUUGGGGCACUUGCACUACCUGCAGAUCCGAGUAGACGGGCUCUUCGAUGGGAACAAUA-UACUGCUCCAUUU----------------- --((((..(((((..(((((.....)))))..(((......))))))))..))))(((.((...-...)).)))....----------------- ( -21.00, z-score = -1.02, R) >dp4.chrXR_group8 4028607 77 - 9212921 CUCCUCUUGGGGCACUUGCACCACCUGCAAAUCCGAGUAGACGGGCUCCUCUAUCGGCACUAGA-UACUGCUCCAUUU----------------- .......(((((((.(((((.....)))))..((((.((((.((...)))))))))).......-...)))))))...----------------- ( -21.40, z-score = -1.39, R) >droPer1.super_38 507577 77 + 801819 CUCCUCUUGGGGCACUUGCACCACCUGCAAAUCCGAGUAGACGGGCUCCUCUAUCGGCACUAGA-UACUGCUCCAUUU----------------- .......(((((((.(((((.....)))))..((((.((((.((...)))))))))).......-...)))))))...----------------- ( -21.40, z-score = -1.39, R) >droWil1.scaffold_180916 2258967 71 - 2700594 CUUUUCUUGAGGGACUUGGACCACUUGCAAAUCCGAAUAGACUGGUUCCUUUAAU------AUA-UAUGGUUCCAUCU----------------- ..........((((((.((((((.((.(......)....)).)))))).......------...-...))))))....----------------- ( -10.74, z-score = 0.95, R) >droVir3.scaffold_13049 7079175 95 + 25233164 UUCGUCGUGCGGUACUUGCACCACUUGCAGGUCCGAGUAGACGGGCUUCAUUUCCAUGUCCUCACUGUUGCUAUGUACGAUAUAUUGUUCCAUGG ...(((((((((.(((((((.....))))))))).(((.((.((((...........)))))))))........))))))).............. ( -27.10, z-score = -1.16, R) >droMoj3.scaffold_6680 5355350 95 + 24764193 UUCGUCGUGCGGCACUUGCACCACUUGCAGGUCGGAGUAGACGGGUUUCAUUUCCAUGUCCUCACUAUUGCUAUGUACUAUGUACUGUUCCAUGG ..(((.((((((((((((((.....)))))))..(((..((((((........)).)))))))......)))..)))).)))............. ( -21.30, z-score = 0.77, R) >droGri2.scaffold_15110 18798345 95 - 24565398 GUCGUCAUGCGGCACUUGUACCACCUGCAAAUCUGAGUAGACUGGCUUCAUUUCCAUGUCGUCGCUGUUGCUGUGCACUAUGUAGCCUUCCAUGG .....((((.(((((..((..(((..((((...(((...((((((........))).))).)))...)))).))).))...)).)))...)))). ( -21.30, z-score = 0.98, R) >consensus CUCAUCUUGGGGCACUUGCACCACCUGCAAAUCCGAGUAGACGGGCUCCUCUAGCGGCACAAUA_UACUGCUCCAUUU_________________ .......(((((((.(((((.....)))))....((((......))))....................))))))).................... (-12.99 = -12.26 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:50 2011