| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,474,237 – 4,474,316 |
| Length | 79 |
| Max. P | 0.607574 |
| Location | 4,474,237 – 4,474,316 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 70.54 |
| Shannon entropy | 0.51812 |
| G+C content | 0.43173 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -7.22 |
| Energy contribution | -8.97 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4474237 79 - 23011544 ----------------ACCCUCGCCCCCAUAUUGCAUUUCCAAGUGCUCGUAUGUAAUUGCUUGUACUCAAUUGCUUUGAUUGGUAACGCCUCUU ----------------...........(((((.(((((....)))))..))))).....((...(((.(((((.....))))))))..))..... ( -12.30, z-score = -0.89, R) >droAna3.scaffold_12943 1673556 69 + 5039921 --------------------------ACCUAUUAAAGUUCCAAGUACCUGCAUGUAAUAGCUGUCUUUCAAUUACUUGGCUUUGAAACCACUUCA --------------------------.....((((((..(((((((...((........))((.....))..))))))))))))).......... ( -10.40, z-score = -0.92, R) >droEre2.scaffold_4929 4564034 92 - 26641161 -ACCUCA--CAGCCCAUUCCUCACCCGCAUAUUGAGUUCCAAAGUGCGCGAAUGUAAUUGCUUGUACUCAAUUGCUUUGCUUGGAAACGCCUCUU -......--..((...((((......((((.(((.....))).))))(((((.(((((((........))))))))))))..))))..))..... ( -20.90, z-score = -1.99, R) >droYak2.chr2L 4510382 95 - 22324452 AACCUCACCCAUCCCAUUCCUCACCAGCAUAUUGAGUUUCUAAGUGCGCGUAUGUAAUUGCUUGUACUUAAUUGGUUUGCUUGAAAACGCCUCCU ....(((..((..(((...((((.........))))....((((((((.(((......))).))))))))..)))..))..)))........... ( -17.90, z-score = -1.76, R) >droSec1.super_5 2573134 79 - 5866729 ----------------ACCCUCGCCCGCAUAUUGAGUUUCCUAGUGCUCAUAUGUAAUUGCUUGUACUGAAUUACUUUGCUUGGAAACGCCUCUU ----------------......((..((((((.((((........))))))))))....((..(((......)))...))..(....)))..... ( -13.20, z-score = -0.87, R) >droSim1.chr2L 4401441 79 - 22036055 ----------------ACCCUCGCCCGCAUAUUGAGUUUCCAAGUGCUCGUAUGUAAUUGCUUGUACUCAAUUGCUUUGCUUGGAAACGCCUCUU ----------------..((..((..(((.(((((((...(((((((......))....))))).))))))))))...))..))........... ( -18.10, z-score = -2.11, R) >consensus ________________ACCCUCGCCCGCAUAUUGAGUUUCCAAGUGCUCGUAUGUAAUUGCUUGUACUCAAUUGCUUUGCUUGGAAACGCCUCUU ...................................((((((((((........(((((((........)))))))...))))))))))....... ( -7.22 = -8.97 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:32 2011