| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,734,048 – 6,734,121 |
| Length | 73 |
| Max. P | 0.594405 |
| Location | 6,734,048 – 6,734,121 |
|---|---|
| Length | 73 |
| Sequences | 14 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 75.34 |
| Shannon entropy | 0.56620 |
| G+C content | 0.51937 |
| Mean single sequence MFE | -22.31 |
| Consensus MFE | -10.33 |
| Energy contribution | -9.46 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6734048 73 - 24543557 GAUGACAACUUUCUGCCCAAGCUGCCGCAGCUUUUCCGCGAACGUGAGCGUUUGAGGCGUAGGAAGUGAGUGA-- ....((.(((((((((((((((((...)))))).....((((((....)))))).)).)))))))))..))..-- ( -25.60, z-score = -1.63, R) >droSim1.chr3L 6215500 73 - 22553184 GAUGACAACUUUCUGCCCAAGCUGCCGCAGCUUUUCCGCGAGCGUGAGCGUUUGAGGCGUAGGAAGUGAGUGA-- ....((.(((((((((((((((((...)))))).....((((((....)))))).)).)))))))))..))..-- ( -25.60, z-score = -1.21, R) >droSec1.super_2 6670681 73 - 7591821 GAUGACAACUUUCUGCCCAAGCUGCCGCAGCUUUUCCGCGAGCGUGAGCGUUUGAGGCGCAGGAAGUGAGUAA-- ....((.(((((((((((((((((...)))))).....((((((....)))))).)).)))))))))..))..-- ( -27.60, z-score = -1.66, R) >droYak2.chr3L 7319009 73 - 24197627 GAUGACAACUUUCUGCCGAAGCUACCGCAGCUUUUCCGCGAGCGUGAGCGUUUGAGGCGUAGGAAGUGAGUGA-- ....((.(((((((((.((((((.....)))))).((.((((((....)))))).)).)))))))))..))..-- ( -24.20, z-score = -0.97, R) >droEre2.scaffold_4784 21132024 73 + 25762168 GAUGACAACUUUCUGCCCAAGCUGCCGCAGCUUUUCCGCGAGCGUGAGCGUUUGAGGCGUAGGAAGUGAGUGA-- ....((.(((((((((((((((((...)))))).....((((((....)))))).)).)))))))))..))..-- ( -25.60, z-score = -1.21, R) >droAna3.scaffold_13337 3114742 73 + 23293914 GAUGAGAACUUUUUGCCCAAGCUGCCGCAGCUUUUCCGUGAGCGUGAGCGUUUGAGGCGCAGGAAGUAAGUGA-- .......(((((((((((((((.(((((.((((......))))))).))))))).))))..))))))......-- ( -23.60, z-score = -1.01, R) >dp4.chrXR_group8 4018231 75 + 9212921 AACAAGAACUUUCUGCCCAAGCUGCCGCAGCUAUUCCGCGAGCGUGAACGUCUAAGGAGGAGAAAGUGAGUACCA .......(((((((.((..(((((...)))))..(((...((((....)).))..))))))))))))........ ( -21.20, z-score = -1.04, R) >droPer1.super_38 497324 75 - 801819 AACAAGAACUUUCUGCCCAAGCUGCCGCAGCUAUUCCGCGAGCGUGAACGUCUAAGGAGGAGAAAGUGAGUGCCA ..((...(((((((.((..(((((...)))))..(((...((((....)).))..))))))))))))...))... ( -22.50, z-score = -0.99, R) >droWil1.scaffold_180916 2244840 73 + 2700594 GAUGAGAAUUUUCUACCCAAAUUGCCGCAAUUAUUUCGCGAACGAGAACGUCUAAGGCGAAGAAAGUGAGUUC-- ...(((.(((((((.......(((((.......(((((....)))))........))))))))))))...)))-- ( -12.37, z-score = 0.30, R) >droVir3.scaffold_13049 1080656 73 - 25233164 GAUGAGAACUUUCUGCCCAAGCUGCCGCAGCUGUUUCGCGAACGUGAACGUCUGAGACGCAGAAAGUAAGUGA-- .......(((((((((...(((((...)))))((((((.((.((....)))))))))))))))))))......-- ( -26.50, z-score = -2.91, R) >droMoj3.scaffold_6680 24561905 73 + 24764193 GAUGAGAACUUUCUGCCCAAGCUGCCACAGCUGUUUCGUGAACGUGAACGUUUGAGACGCAGAAAGUAAGUGU-- .......(((((((((...(((((...)))))(((((..(((((....)))))))))))))))))))......-- ( -27.10, z-score = -4.00, R) >droGri2.scaffold_15110 2229541 73 - 24565398 GCCGAGAACUUUUUGCCCAAGCUGCCGCAGCUGUUUCGCGAACGUGAACGUCUCAGACGCAGAAAGUGAGUCA-- ...((..(((((((((...(((((...)))))((((.(.((.((....)))).))))))))))))))...)).-- ( -21.40, z-score = -0.40, R) >anoGam1.chr2L 37242554 71 + 48795086 GUGGAAAACUUUUUGCCUUACAUUCCGAAACUAUUUCGCGACAAGGAAAGGGAACGUCGCAAUAGGUAAAG---- ...........(((((((........(((.....)))(((((.............)))))...))))))).---- ( -13.52, z-score = -0.32, R) >triCas2.ChLG3 6892791 65 - 32080666 AGUGAGAACUUCUUGCCUGAAUUGCCCAGAUUGUUCCGGGAAAAGGAAAGACUGGCCAGGAAGCG---------- ........(((((((((.......(((.((....)).)))...((......)))).)))))))..---------- ( -15.60, z-score = 0.01, R) >consensus GAUGAGAACUUUCUGCCCAAGCUGCCGCAGCUUUUCCGCGAGCGUGAACGUUUGAGGCGCAGGAAGUGAGUGA__ .......(((((((.....(((((...)))))...((....(((....)))....))...)))))))........ (-10.33 = -9.46 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:49 2011