| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,710,145 – 6,710,237 |
| Length | 92 |
| Max. P | 0.545594 |
| Location | 6,710,145 – 6,710,237 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 76.54 |
| Shannon entropy | 0.41540 |
| G+C content | 0.47403 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -13.83 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6710145 92 - 24543557 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUACAAGUACGAAAUGCGUUUGCCUGGCAACC-GUCUCACUGCCACUG----------------------------- ..(((((((...)))))))...........((.(((((((((((.....)))).)))...))))..)).(((((...-.......)))))...----------------------------- ( -19.00, z-score = -0.94, R) >droSim1.chr3L 6195084 90 - 22553184 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUACAAGUACGAAAUGCGUUUGCCUGGCAACC-AUCUCACUGCCAC------------------------------- ..(((((((...)))))))...........((.(((((((((((.....)))).)))...))))..)).(((((...-.......))))).------------------------------- ( -19.00, z-score = -1.38, R) >droSec1.super_2 6646529 92 - 7591821 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUACAAGUAUGAAAUGCGUUUGCCUGGCAACC-GUCUCACUGCCACUG----------------------------- ..(((((((...)))))))...........((.(((((((((((.....)))).)))...))))..)).(((((...-.......)))))...----------------------------- ( -16.90, z-score = -0.25, R) >droYak2.chr3L 7294457 94 - 24197627 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUAAAAGUACGAAAUGCGUUUGCCUGGCAACC-----AACUGCCACUGCCACUA----------------------- ((((......((((((((.(((((......(((......))).....)))))...))))))))......(((((...-----...)))))...))))..----------------------- ( -23.60, z-score = -2.55, R) >droEre2.scaffold_4784 21108000 91 + 25762168 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUAAAAGUACGAAAUGCGUUUGCCUGGCAACC------AGGGCCACUGCCAC------------------------- ((((......((((((((.(((((......(((......))).....)))))...))))))))....(((((...))------))).))))......------------------------- ( -24.10, z-score = -1.63, R) >droAna3.scaffold_13337 3090075 101 + 23293914 GUUGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUAAAAAUAUGAAAUGCGCUUGCCAGGCAACCGGAGAACCCGGCAACUCGGUUCCC--------------------- ((((....((((((((((...((((.(((.(((......)))..))).))))...))))))))...))....)))).((.(((((.(....)..)))))))--------------------- ( -23.50, z-score = -1.00, R) >dp4.chrXR_group8 3991351 119 + 9212921 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUGAUGGAAAUAUGAAAUGCGUGCGCCUGGUAACC---CUGCCUGCCACCGCCAUCCCGCCAACCCGCCCACCCAUUGGU ((((..(((.((((((((...((((((((.(((......)))..))))))))...)))))))(((.((..((((...---.)))).))))).).))).))))........(((.....))). ( -31.00, z-score = -1.55, R) >droPer1.super_38 470855 119 - 801819 GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUGAUGGAAAUAUGAAAUGCGUGCGCCUGGCAACC---CUGCCUGCCACCGCCAUCCCGCCAACCCGCCCACCCACUGGU ((((..(((.((((((((...((((((((.(((......)))..))))))))...)))))))(((.((..((((...---.)))).))))).).))).))))........(((.....))). ( -33.00, z-score = -2.09, R) >consensus GUGGAAAUGUCGCAUUUCCCUUUUUCAUUUGUUACGCUCGACUUAAUAAAAGUACGAAAUGCGUUUGCCUGGCAACC___CUCACUGCCACUGCCA__________________________ ..((......((((((((...(((..(((.(((......)))..)))..)))...))))))))....))(((((...........)))))................................ (-13.83 = -13.93 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:47 2011