| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,704,322 – 6,704,417 |
| Length | 95 |
| Max. P | 0.997460 |
| Location | 6,704,322 – 6,704,417 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.76 |
| Shannon entropy | 0.08451 |
| G+C content | 0.36214 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -20.20 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.63 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.11 |
| SVM RNA-class probability | 0.997460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6704322 95 + 24543557 -CCAGCUGUAAGUCAUUGACUUUGAUAUUCGAAGUUGGCCAAAGCCAAAUAUCAUAGACCAAAAUCAAAUACCAAAAUACUGGUAAUAGCAAUAAG -...(((((..(((..((((((((.....)))))(((((....)))))...)))..)))..........(((((......))))))))))...... ( -23.10, z-score = -4.26, R) >droSim1.chr3L 6189323 95 + 22553184 -CCAGCUGUAAGUCAUUGACUUUGAUAUUCGAAGUUGGCCAAAGCCAAAUAUCAUAGACCAAAACCAAAUACCAAAAUACUGGUAAUAGCAAUAAG -...(((((..(((..((((((((.....)))))(((((....)))))...)))..)))..........(((((......))))))))))...... ( -23.10, z-score = -4.33, R) >droSec1.super_2 6640764 95 + 7591821 -CCAGCUGUAAGUCAUUGACUUUGAUAUUCGAAGUUGGCCAAAGCCAAAUAUCAUAGACCAAAACCAAAUACCAAAAUACUGGUAAUAGCAAUAAG -...(((((..(((..((((((((.....)))))(((((....)))))...)))..)))..........(((((......))))))))))...... ( -23.10, z-score = -4.33, R) >droEre2.scaffold_4784 21102269 96 - 25762168 CCAGGCUGUAAGUCAUUGACUUUGAUAUUCGAAGUUGGCCAAAGCCAAAUAUCAUAGACCAAAACCAAAUACCAAGGCACUAGAAAUAGCUAUAAG ...((((((..(((..((((((((.....)))))(((((....)))))...)))..))).....((.........))........))))))..... ( -18.50, z-score = -1.58, R) >consensus _CCAGCUGUAAGUCAUUGACUUUGAUAUUCGAAGUUGGCCAAAGCCAAAUAUCAUAGACCAAAACCAAAUACCAAAAUACUGGUAAUAGCAAUAAG ....(((((..(((..((((((((.....)))))(((((....)))))...)))..)))..........(((((......))))))))))...... (-20.20 = -20.70 + 0.50)
| Location | 6,704,322 – 6,704,417 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 94.76 |
| Shannon entropy | 0.08451 |
| G+C content | 0.36214 |
| Mean single sequence MFE | -25.57 |
| Consensus MFE | -24.06 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.993416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6704322 95 - 24543557 CUUAUUGCUAUUACCAGUAUUUUGGUAUUUGAUUUUGGUCUAUGAUAUUUGGCUUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACAGCUGG- .............(((((....((((((((((..((((((...(........)...))))))..))))))))))(((((...)))))...)))))- ( -26.70, z-score = -3.75, R) >droSim1.chr3L 6189323 95 - 22553184 CUUAUUGCUAUUACCAGUAUUUUGGUAUUUGGUUUUGGUCUAUGAUAUUUGGCUUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACAGCUGG- .............(((((....((((((((((..((((((...(........)...))))))..))))))))))(((((...)))))...)))))- ( -25.80, z-score = -3.11, R) >droSec1.super_2 6640764 95 - 7591821 CUUAUUGCUAUUACCAGUAUUUUGGUAUUUGGUUUUGGUCUAUGAUAUUUGGCUUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACAGCUGG- .............(((((....((((((((((..((((((...(........)...))))))..))))))))))(((((...)))))...)))))- ( -25.80, z-score = -3.11, R) >droEre2.scaffold_4784 21102269 96 + 25762168 CUUAUAGCUAUUUCUAGUGCCUUGGUAUUUGGUUUUGGUCUAUGAUAUUUGGCUUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACAGCCUGG .............((((.((..((((((((((..((((((...(........)...))))))..))))))))))(((((...)))))...)))))) ( -24.00, z-score = -1.68, R) >consensus CUUAUUGCUAUUACCAGUAUUUUGGUAUUUGGUUUUGGUCUAUGAUAUUUGGCUUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACAGCUGG_ .............(((((....((((((((((..((((((...(........)...))))))..))))))))))(((((...)))))...))))). (-24.06 = -24.38 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:46 2011