| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,683,434 – 6,683,525 |
| Length | 91 |
| Max. P | 0.877988 |
| Location | 6,683,434 – 6,683,525 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 54.12 |
| Shannon entropy | 0.99889 |
| G+C content | 0.38647 |
| Mean single sequence MFE | -13.53 |
| Consensus MFE | -5.75 |
| Energy contribution | -5.89 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6683434 91 + 24543557 -------------AUACAUAAUAUUAUUACAUAUACAU-AUUACAUAUUAUCUUGCCCAACACUUACCUAAUCCAAAGAAGGCCAAAACAGCAAUGGCCUGUCCA -------------.....(((((((((.....))).))-)))).......((((.....................))))((((((.........))))))..... ( -9.40, z-score = -0.39, R) >droSec1.super_2 6619899 102 + 7591821 --AUACAUAAAAAGUAUA-AAUAUUAUAAAAUACAGAUUGACGCAGGUUAUCUUGCCCAACACUUACCCAAUCCAAAGAAGGCCAAAACAGCAAUGGCCUGUCCA --((((.......)))).-....................((((((((....))))).......................((((((.........))))))))).. ( -16.70, z-score = -1.11, R) >droYak2.chr3L 7263622 105 + 24197627 AUGCAUCAAAAGCAUUGUUUUCUUUAUAAAAUUCAGAUUAACUUGGAAUAUCUUAUUCAAUACUAACCCAAUCCAAAGAAGGACAAAACAGCGAUUGCCUGUCCA ((((.......))))....((((((........(((......)))(((((...)))))................))))))(((((.....((....)).))))). ( -11.90, z-score = 0.56, R) >droEre2.scaffold_4784 21079504 105 - 25762168 AUCCAUUAAGCGCAUUGUUGAAUUUAUAAAAUUCAGAUCAACAUGGAAUAUUUCGUCCAAUACUUACCCAAUCCAAAGAAGGCCAAUACAGCGAUUGCCUGUCCA ........((.(((((((((.......................((((........)))).............((......))......)))))).)))))..... ( -12.80, z-score = 0.68, R) >dp4.chrXR_group8 3961652 90 - 9212921 --------AGCCAAAUAACAAAAUAGAAACUC--GAAUUA--UUCAAAUUCUUC---CAAAACUCACCCAAUCCGAAGAAUGCUAGCACAGCAAUGGCCUGUCCA --------.((((...................--......--.....(((((((---.................)))))))(((.....)))..))))....... ( -11.83, z-score = -1.35, R) >droPer1.super_38 441091 92 + 801819 --------AACAAAAUAACAAAAUAGAAACUCUCGAAUUA--UUCAAAUUCUUC---CAAAACUCACCCAAUCCGAAGAAUGCCAGCACAGCGAUGGCCUGUCCA --------..............((((..............--.....(((((((---.................)))))))((((.(.....).))))))))... ( -9.73, z-score = -0.54, R) >droWil1.scaffold_180916 2146507 94 - 2700594 ----AAUAACGUAAGAGUUAGAAGGGAUAAGCUUCAGCUGUUUUCACAAUUC-------AAACUCACCCAAUCCAAAGAAGGCCAGUACAGCAAUGGCCUGUCCG ----..........(((((.(((.(((..(((....)))...)))....)))-------.)))))..............((((((.........))))))..... ( -21.80, z-score = -1.87, R) >droVir3.scaffold_13049 1007770 78 + 25233164 ---------------------AUUAAUAAUACUCUU-UGAGUAUUGAAUAUUUU-----AAACCUACCUAAGCCAAAGAAGGCCAAAACAGCGAUGGCCUGUCCG ---------------------.....((((((((..-.))))))))........-----....................((((((.........))))))..... ( -14.50, z-score = -1.85, R) >droMoj3.scaffold_6680 24496037 85 - 24764193 -------------GUAUAUAGCUCUAAAUAGUAUUGAUCGACGUCAGCUCAG-------AGACUCACCUAAACCAAAGAAGGCCAGUACAGCGAUGGCCUGUCCC -------------..........................((((((.......-------.)))................((((((.........))))))))).. ( -14.20, z-score = 0.64, R) >droGri2.scaffold_15110 2174099 79 + 24565398 ----------------UA-AAUAAUAUAAUAUAUGGA---------AAUGCCUUAACAUUCACUUACCUAAACCAAAGAAGGCCAACACAGCGAUGGCCUGACCG ----------------..-...............((.---------((((......))))...................((((((.(.....).))))))..)). ( -11.20, z-score = -1.34, R) >triCas2.ChLG4 10692517 80 - 13894384 -------------------------AUAUGGUUAAAACCAAGCAAAAAUCGCUUUACUACAACGUACCUAAGCAGAAAUGAGCAAUGACGGGCAGUGCUUGUCCC -------------------------...((((....)))).((.....(((((((((......)))...)))).)).....))...(((((((...))))))).. ( -14.80, z-score = -0.06, R) >consensus ________A____AUAGAUAAAAUUAUAAAAUUCAGAUUAACUUCAAAUAUCUU___CAAAACUUACCCAAUCCAAAGAAGGCCAAAACAGCGAUGGCCUGUCCA ...............................................................................((((((.........))))))..... ( -5.75 = -5.89 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:44 2011