| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,672,262 – 6,672,319 |
| Length | 57 |
| Max. P | 0.891733 |
| Location | 6,672,262 – 6,672,319 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.27159 |
| G+C content | 0.38338 |
| Mean single sequence MFE | -14.12 |
| Consensus MFE | -9.44 |
| Energy contribution | -9.38 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6672262 57 + 24543557 UUUGUGCGGUGUUGUCUGUUCCAGAUGAAACAGUUCCUAUAACACUGCACUUAUUUU ...(((((((((((((((((.(....).))))).....))))))))))))....... ( -20.10, z-score = -4.62, R) >droSim1.chr3L 6157830 57 + 22553184 UUUGUGCCGUGUUGUCUGUGCCAGAUAGAACAGUCUCUAUAACACUGCUUUUAUUUU .....((.((((((((((...))))((((......)))))))))).))......... ( -10.90, z-score = -1.05, R) >droSec1.super_2 6608917 57 + 7591821 UUUGUGUGGUGUUGUCUGUGCCAGAUAGAAUAGUCUCUGUAACACUGUAUUUAUUUU ...(((..((((((((((...))))((((......))))))))))..)))....... ( -11.60, z-score = -1.46, R) >droEre2.scaffold_4784 21068598 56 - 25762168 CUUGUGCAGUGUUGUCUGAGCCAGAUAAAACGGUCUCUA-AACCGUGCAUUUAUUUU ...((((....(((((((...))))))).(((((.....-.)))))))))....... ( -13.90, z-score = -2.11, R) >consensus UUUGUGCGGUGUUGUCUGUGCCAGAUAAAACAGUCUCUAUAACACUGCAUUUAUUUU ...(((((((((((((((...)))))(((....)))....))))))))))....... ( -9.44 = -9.38 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:42 2011