| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,465,106 – 4,465,202 |
| Length | 96 |
| Max. P | 0.744161 |
| Location | 4,465,106 – 4,465,202 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.63438 |
| G+C content | 0.49139 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -7.42 |
| Energy contribution | -8.83 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4465106 96 + 23011544 CGACUCCCUCUCACGCUGCCAACACUGGCCAUUUCUCGCAUAUCCAACUACAGAUGAUGAUCAGCUGUUUGUUGUUUAUGUGGGAGC-GGCCUGAGA ........(((((.(((((((....))))...((((((((((..((((.((((.((.....)).))))..))))..)))))))))).-))).))))) ( -35.90, z-score = -3.75, R) >droWil1.scaffold_180949 3587212 93 - 6375548 -CUGCUCUCCUUGCGUUGCGAUAGUCA-CCGUCGUGUCCAUCUCUAGAUGAAAGGAUUU--GAACAGCUGAUUGUCGAAAAGGGGGUUGGACUCAAA -(((..((((((......(((((((((-.(.(((.((((...((.....))..)))).)--))...).)))))))))..))))))..)))....... ( -26.30, z-score = -0.70, R) >droSim1.chr2L 4392359 93 + 22036055 CGACUCCCUCUCACGCUGCCAACACUGGUCAUUUUGCGCAUAUCCAACUACAGCUGAU---CAGCUGUUUGUUGUUUAUGCGGAAGC-GGCCUGAGA ........(((((.(((((((....))......((.((((((..((((.((((((...---.))))))..))))..)))))).))))-))).))))) ( -36.40, z-score = -4.30, R) >droSec1.super_5 2564027 92 + 5866729 CGACUCCCUCUCACGCUGCCAACACUGGUCAUUUUGCGCAUAUCCAACUACAGCUGAU---CAGCUGUUU-UUGUUUAUGUGGGAGC-GGCCUGAAA ((.(((((......((.((((....))))......))(((((..(((..((((((...---.))))))..-)))..)))))))))))-)........ ( -31.10, z-score = -3.08, R) >droYak2.chr2L 4500964 92 + 22324452 UGAGUCC-UCUCACGCUCCCAUCACUGGCCAUUUUGGGCACCUCCAACAACAGCUGAU---CAGCUGUUUAUUGUUUAUACGGGAGU-GGCCUGAGA ......(-((...(((((((.......(((......))).........(((((((...---.)))))))............))))))-)....))). ( -30.10, z-score = -1.82, R) >droEre2.scaffold_4929 4554824 91 + 26641161 CGAGUAC-UCUCACGCUGCCAUCACUGGCUAUUUUGGGCAUCCCAAACA-CAGCUGAU---CAGCUGUUGAUUGUUUAUGUGGGAGC-GGACUGAAA .(((...-.))).((((.(((.((..(((...((((((...)))))).(-(((((...---.)))))).....)))..))))).)))-)........ ( -29.30, z-score = -1.69, R) >droAna3.scaffold_12943 1664353 92 - 5039921 -CCGUCCAUCUCACGAUGUCAUCUCUA-UAAUUUCUUCCACCUCUUGGU-CAGCUGGUA--UUGUUGAUUAUUGUUGAUUUGGGAGAAGGCCCUAAA -..(((((((....)))).........-....((((((((..((.((((-((((.....--..)))))))).....))..)))))))))))...... ( -21.40, z-score = -0.85, R) >consensus CGAGUCCCUCUCACGCUGCCAUCACUGGCCAUUUUGCGCAUCUCCAACUACAGCUGAU___CAGCUGUUUAUUGUUUAUGUGGGAGC_GGCCUGAAA .........(((.(((.((((....))))....................(((((((.....)))))))...........))).)))........... ( -7.42 = -8.83 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:31 2011