| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,659,457 – 6,659,548 |
| Length | 91 |
| Max. P | 0.542886 |
| Location | 6,659,457 – 6,659,548 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.78 |
| Shannon entropy | 0.27259 |
| G+C content | 0.39790 |
| Mean single sequence MFE | -21.89 |
| Consensus MFE | -12.97 |
| Energy contribution | -13.13 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6659457 91 - 24543557 AUUACGUAGCUGUUUCAUUGUUCCA------------CCA----------------UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCAACAUAAAAGACGACAGCUUUG ....((.(((((((...((((((..------------...----------------....)))))).................((((((((........))))))))..))))))).)) ( -20.00, z-score = -3.23, R) >droPer1.super_38 413092 119 - 801819 AUUACGUUGCCGUUUCAUUGUUCCUCGAACUUGGGGCUCAAGCUGGGGGCUGAGGGGUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCUACAUAAAAGACGACAGCUCUG .....(((...((..((..((((...)))).))..))...)))..(((((((.((((((......))))))............((((((((........))))))))....))))))). ( -31.40, z-score = -0.87, R) >dp4.chrXR_group8 3933619 119 + 9212921 AUUACGUUGCCGUUUCAUUGUUCCUCGAACUUGGGGCUCAAGCUGGGGGCUGAGGGGUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCUACAUAAAAGACGACAGCUCUG .....(((...((..((..((((...)))).))..))...)))..(((((((.((((((......))))))............((((((((........))))))))....))))))). ( -31.40, z-score = -0.87, R) >droAna3.scaffold_13337 3021307 92 + 23293914 AUUACGUAGCCGUUUCAUUGUUCCU-----------CCCG----------------CUCCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCGACAUAAAAGACGACAGCUCCG ....((.(((.(((...((((((..-----------....----------------....)))))).................((((((((........))))))))..))).))).)) ( -16.90, z-score = -1.03, R) >droEre2.scaffold_4784 21055792 91 + 25762168 AUUACGUAGCUGUUUCAUUGUUCCU------------CCA----------------UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUACGGCAGGCAACAUAAAGGACGACAGCUUUG ....((.(((((((((..(((((((------------((.----------------....(((.....))).(((...........))).)).))).)))).....)).))))))).)) ( -15.40, z-score = -1.23, R) >droYak2.chr3L 7239015 91 - 24197627 AUUACGUAGCUGUUUCAUUGUUCCU------------CCA----------------UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCAACAUAAAAGACGACAGCUUUG ....((.(((((((...((((((..------------...----------------....)))))).................((((((((........))))))))..))))))).)) ( -20.00, z-score = -3.11, R) >droSec1.super_2 6596341 91 - 7591821 AUUACGUAGCUGUUUCAUUGUUCCU------------UCA----------------UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCAACAUAAAAGACGACAGCUUUG ....((.(((((((...((((((..------------...----------------....)))))).................((((((((........))))))))..))))))).)) ( -20.00, z-score = -3.18, R) >droSim1.chr3L 6142376 91 - 22553184 AUUACGUAGCUGUUUCAUUGUUCCU------------UCA----------------UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCAACAUAAAAGACGACAGCUUUG ....((.(((((((...((((((..------------...----------------....)))))).................((((((((........))))))))..))))))).)) ( -20.00, z-score = -3.18, R) >consensus AUUACGUAGCUGUUUCAUUGUUCCU____________CCA________________UUUCGAACAAGCUUCAUAAUAUUUUCACUUUUAUGGCAGGCAACAUAAAAGACGACAGCUUUG ....((.(((.(((...((((((.....................................)))))).................((((((((........))))))))..))).))).)) (-12.97 = -13.13 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:38 2011