Locus 6428

Sequence ID	dm3.chr3L
Location	6,655,315 – 6,655,429
Length	114
Max. P	0.784180

overview

Window 2

Location	6,655,315 – 6,655,429
Length	114
Sequences	12
Columns	119
Reading direction	forward
Mean pairwise identity	90.69
Shannon entropy	0.19892
G+C content	0.34787
Mean single sequence MFE	-20.07
Consensus MFE	-17.57
Energy contribution	-17.49
Covariance contribution	-0.08
Combinations/Pair	1.04
Mean z-score	-1.49
Structure conservation index	0.88
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.68
SVM RNA-class probability	0.784180
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 6655315 114 + 24543557
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.24, R)
>droSim1.chr3L 6138102 114 + 22553184
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.24, R)
>droSec1.super_2 6592094 114 + 7591821
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAACCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.46, R)
>droYak2.chr3L 7234640 114 + 24197627
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCAGUACAAAGCCAACCGC-----
...((.((((..........(((((((....))))))).....((((..(((((...(((...(((((..............))))).)))....)))))...)))))))))).----- ( -22.34, z-score =  -2.32, R)
>droEre2.scaffold_4784 21051523 114 - 25762168
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCAGAACAAAGCCAACCGC-----
...((.(((((.........(((((((....)))))))............((((...(((...(((((..............))))).)))....)))).......))))))).----- ( -21.04, z-score =  -2.21, R)
>droAna3.scaffold_13337 3016525 114 - 23293914
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.24, R)
>dp4.chrXR_group8 3929629 114 - 9212921
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.24, R)
>droPer1.super_38 409030 114 + 801819
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC-----
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..))).))...............----- ( -18.64, z-score =  -1.24, R)
>droWil1.scaffold_180916 2071301 105 - 2700594
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAGACUGAAAUAGAUUUACAUGCGUAUUUCCCGGACCGC--------------
...(((((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...((((((((((...))).))))))).)))...)))))......-------------- ( -21.60, z-score =  -1.94, R)
>droVir3.scaffold_13049 970015 117 + 25233164
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACUGAAAUAGAUUUACAUGCGUAUUCCCCAG--CGCCGAAAGCGAACCAC
.....(((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..(((...)))...))))).)))..)))....--((.(....)))...... ( -21.10, z-score =  -1.32, R)
>droMoj3.scaffold_6680 24456519 118 - 24764193
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACUGAAAUAGAUUUACAUGCGUAUUCCCAAGCGCAA-AAGAGCGAACCAC
.....(((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..(((...)))...))))).)))..)))....(((..-....)))...... ( -21.40, z-score =  -1.52, R)
>droGri2.scaffold_15110 2145342 119 + 24565398
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACUGAAAUAGAUUUACAUGCGUAUUCCCUAGUGCGCCAAGAGCGAACCAC
.....(((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..(((...)))...))))).)))..)))...((.(((.....))).))... ( -21.50, z-score =  -0.93, R)
>consensus
UUACGAGUUGGAAAAUUACAUUUUAUUAUAUGAUAAAAGUUAAGCUUCAACUGGACGACGAUAAUGUAUACCCAAAUAGAUUUACAUGCGUAUUCCCCGAACAAAGCCAACCGC_____
.....(((((((...(((..(((((((....)))))))..)))..)))))))(((..(((...(((((..............))))).)))..)))....................... (-17.57 = -17.49 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:37 2011