| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,624,705 – 6,624,757 |
| Length | 52 |
| Max. P | 0.916549 |
| Location | 6,624,705 – 6,624,757 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.17768 |
| G+C content | 0.44231 |
| Mean single sequence MFE | -13.36 |
| Consensus MFE | -12.00 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6624705 52 + 24543557 GGAAUUAUUGCUAGCUUCCGGUUGCGCAGAUUCUUAGUCUGCUAAAUUCCCA ((((((...((.(((.....)))))((((((.....))))))..)))))).. ( -15.90, z-score = -2.72, R) >droSim1.chr3L 6096684 52 + 22553184 GGAAUUAUUGCUAGCUUCCGGUUGCGCAGAUUCUUAGUCUGCUAAAUUCCCA ((((((...((.(((.....)))))((((((.....))))))..)))))).. ( -15.90, z-score = -2.72, R) >droSec1.super_253 1789 52 - 18564 GGAAUUAUUGCUAACUUCCGGUUGCGCAGAUUCUUAGUCUGCUAAAUUCCAA ((((((...((.(((.....)))))((((((.....))))))..)))))).. ( -16.80, z-score = -3.99, R) >droYak2.chr3L 7197579 52 + 24197627 GGAAUUAUUGCUAGCUUCCGGUUGCGCAAAUCCUUAUGCUGCUAAAUCUCGG (((....((((((((.....)))).)))).)))................... ( -7.20, z-score = 0.98, R) >droEre2.scaffold_4784 9299010 52 + 25762168 GGAAUUAUUGCUAGCUUCCGGUUGCGCAGAUUCAUAUUCCGCUAAAUUCCGG ((((((...((.(((.....)))))((.((.......)).))..)))))).. ( -11.00, z-score = -0.54, R) >consensus GGAAUUAUUGCUAGCUUCCGGUUGCGCAGAUUCUUAGUCUGCUAAAUUCCCA ((((((...((.(((.....)))))((((((.....))))))..)))))).. (-12.00 = -12.88 + 0.88)
| Location | 6,624,705 – 6,624,757 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.17768 |
| G+C content | 0.44231 |
| Mean single sequence MFE | -11.88 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.06 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6624705 52 - 24543557 UGGGAAUUUAGCAGACUAAGAAUCUGCGCAACCGGAAGCUAGCAAUAAUUCC ..((((((..(((((.......)))))((...(....)...))...)))))) ( -12.90, z-score = -1.82, R) >droSim1.chr3L 6096684 52 - 22553184 UGGGAAUUUAGCAGACUAAGAAUCUGCGCAACCGGAAGCUAGCAAUAAUUCC ..((((((..(((((.......)))))((...(....)...))...)))))) ( -12.90, z-score = -1.82, R) >droSec1.super_253 1789 52 + 18564 UUGGAAUUUAGCAGACUAAGAAUCUGCGCAACCGGAAGUUAGCAAUAAUUCC ..((((((..(((((.......)))))((...(....)...))...)))))) ( -12.90, z-score = -2.48, R) >droYak2.chr3L 7197579 52 - 24197627 CCGAGAUUUAGCAGCAUAAGGAUUUGCGCAACCGGAAGCUAGCAAUAAUUCC ..........((.(((........)))))....((((..((....)).)))) ( -8.00, z-score = 0.06, R) >droEre2.scaffold_4784 9299010 52 - 25762168 CCGGAAUUUAGCGGAAUAUGAAUCUGCGCAACCGGAAGCUAGCAAUAAUUCC ..((((((..(((((.......)))))((...(....)...))...)))))) ( -12.70, z-score = -1.47, R) >consensus UCGGAAUUUAGCAGACUAAGAAUCUGCGCAACCGGAAGCUAGCAAUAAUUCC ..((((((..(((((.......)))))((...(....)...))...)))))) (-11.14 = -11.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:32 2011