| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,622,912 – 6,623,004 |
| Length | 92 |
| Max. P | 0.732553 |
| Location | 6,622,912 – 6,623,004 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 88.17 |
| Shannon entropy | 0.24369 |
| G+C content | 0.48575 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -15.87 |
| Energy contribution | -16.24 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6622912 92 - 24543557 CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCUUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.(((((.((..(((----........)))..)).)))))..)))))).... ( -20.50, z-score = -1.47, R) >droSim1.chr3L 6094886 92 - 22553184 CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCUUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.(((((.((..(((----........)))..)).)))))..)))))).... ( -20.50, z-score = -1.47, R) >droSec1.super_2 6559753 92 - 7591821 CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCUUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.(((((.((..(((----........)))..)).)))))..)))))).... ( -20.50, z-score = -1.47, R) >droYak2.chr3L 7195720 92 - 24197627 CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.((((((((..(((----........)))..))))))))..)))))).... ( -26.20, z-score = -3.22, R) >droEre2.scaffold_4784 9297230 92 - 25762168 CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU----AUUGUCCCACGUAGCCGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.((((((.(..(((----........)))..).))))))..)))))).... ( -21.20, z-score = -1.57, R) >droAna3.scaffold_13337 2979710 91 + 23293914 GUGGGUCUUUGCC-UCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..........(((-......((((....))))...))).((((((.((((((((..(((----........)))..))))))))..)))))).... ( -26.90, z-score = -2.14, R) >droPer1.super_38 372082 92 - 801819 GUGUGUCUUUUCCGCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ....((..(((((((((...((((....))))..)))).........(((((((..(((----........)))..))))))))))))..)).... ( -31.60, z-score = -4.64, R) >dp4.chrXR_group8 3892079 92 + 9212921 GUGUGUCUUUUCCGCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU----AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ....((..(((((((((...((((....))))..)))).........(((((((..(((----........)))..))))))))))))..)).... ( -31.60, z-score = -4.64, R) >droVir3.scaffold_13049 10991427 96 - 25233164 AUGUCUCUGGUGCUUGCCUUGAUGUCUUCAUCUUUGGCCGUAAUUGCUGUCGUCGUCGUCGUCGGCGUCGCACGUAGACUGCAGGAAAUUGCUUUG ..((((...((((..(((..((((....))))...))).............(.(((((....))))).)))))..)))).((((....)))).... ( -27.60, z-score = -1.05, R) >droMoj3.scaffold_6680 14926352 89 + 24764193 AUGUCUUUAGUCUCUGCCUUGAUGUCUUCAUCUUUGGCCGUAAUUGCUGUCGUCGAC-------GCGCCGCACGUAGACUGCAGGAAAUUGCUUUG ...............(((..((((....))))...))).((((((.((((.(((.((-------(.......))).))).))))..)))))).... ( -23.30, z-score = -0.83, R) >consensus CUCUGUCUUUUGCUCCAUCUGAUGUCUUCAUCUUUGGCCGUAAUUGUUGCCGUCGUCGU____AUUGUCCCACGUAGACGGCAGGAAAUUGCUUUG ..............(((...((((....))))..)))..((((((.(((((.((..(((............)))..)).)))))..)))))).... (-15.87 = -16.24 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:31 2011