| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,618,000 – 6,618,073 |
| Length | 73 |
| Max. P | 0.780971 |
| Location | 6,618,000 – 6,618,073 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 81.88 |
| Shannon entropy | 0.35100 |
| G+C content | 0.50495 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -18.20 |
| Energy contribution | -17.31 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6618000 73 + 24543557 CUUAGUUU-CCUGCCAUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCGAAGAUUAUCCCUGACCU-UCCUC ........-...((....))..((..((((..((((((((.....))))))))......))))..))..-..... ( -21.00, z-score = -0.59, R) >droSim1.chr3L 6090025 73 + 22553184 CUCAGUUU-CCUGCCAUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCGAAGAUUAUCCCUGACCU-UCCUC ........-...((....))..((..((((..((((((((.....))))))))......))))..))..-..... ( -21.00, z-score = -0.31, R) >droSec1.super_2 6554889 73 + 7591821 CUUAGUUU-CCUGCCAUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCGAAGAUUAUCCCUGACCU-UCCUC ........-...((....))..((..((((..((((((((.....))))))))......))))..))..-..... ( -21.00, z-score = -0.59, R) >droYak2.chr3L 7190729 73 + 24197627 CUCAGUUU-CCUGCCCUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCAAAGAUUAUCCCUGACCU-UUCUC ........-...((....))..((..((((..((((((((.....))))))))......))))..))..-..... ( -21.30, z-score = -0.69, R) >droEre2.scaffold_4784 9292319 74 + 25762168 CUCAGUUUUCCUGCCAUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCAAAGAUUAUCCCUGACCU-UCCUC ............((....))..((..((((..((((((((.....))))))))......))))..))..-..... ( -21.30, z-score = -0.52, R) >droAna3.scaffold_13337 2975151 74 - 23293914 CGCAGUUC-CGCCCCAUGGCUCGUCGGGGAAAUCGGGUAUGGCUGAUGCCUGAAGAUUAUCCCUGACCUGUCCUC .((((...-.(((....)))..((((((((..((((((((.....))))))))......)))))))))))).... ( -27.70, z-score = -1.71, R) >droPer1.super_38 367184 73 + 801819 CUGAAAUA-CUUUUCGUAACUCGUUGGGGAAAUUGUCCACAACUGAUGCAUGCAGAUUAUCCCCAACCA-UCUUC ..((((..-..)))).......((((((((..(((....)))(((.......)))....))))))))..-..... ( -16.80, z-score = -1.95, R) >dp4.chrXR_group8 3887173 73 - 9212921 CUGAAAUA-CUUUUCGUAACUCGUUGGGGAAAUUGUCCACAACUGAUGCAUGCAGAUUAUCCCCAACCA-UUUUC ..((((..-..)))).......((((((((..(((....)))(((.......)))....))))))))..-..... ( -16.80, z-score = -1.94, R) >consensus CUCAGUUU_CCUGCCAUGGCUCGUUGGGGAAAUUGGGUAUGGCUGAUGCCCGAAGAUUAUCCCUGACCU_UCCUC ......................((((((((((((((((((.....))))))...)))).))))))))........ (-18.20 = -17.31 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:30 2011