| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,541,915 – 6,542,016 |
| Length | 101 |
| Max. P | 0.924238 |
| Location | 6,541,915 – 6,542,016 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.60 |
| Shannon entropy | 0.42680 |
| G+C content | 0.51475 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -22.55 |
| Energy contribution | -22.79 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6541915 101 + 24543557 ----------AGGAGGUAGUGUCGGCUCCAUAGGAGGCACUAAGUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAGUUGCAUUGGCUGCAU--GUGGCAGCCGAAAAUGCGG ----------..(((....(((((.((((...)))).).........(((.....)))))))...))).(....)...((((((((((((..--...))))))))...)))). ( -35.50, z-score = -2.11, R) >droSim1.chr3L 6012848 101 + 22553184 ----------AGGAGGUAGUGUCGGCUCCAUAGGAGGCACUAAGUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAGUUGCAUUGGCUGCAU--GUGGCAGCCGAAAAUGCGG ----------..(((....(((((.((((...)))).).........(((.....)))))))...))).(....)...((((((((((((..--...))))))))...)))). ( -35.50, z-score = -2.11, R) >droSec1.super_2 6478483 101 + 7591821 ----------AGGAGGUAGUGUCGGCUCCAUAGGAGGCACUAAGUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAGUUGCAUUGGCUGCAU--GUGGCAGCCGAAAAUGCGG ----------..(((....(((((.((((...)))).).........(((.....)))))))...))).(....)...((((((((((((..--...))))))))...)))). ( -35.50, z-score = -2.11, R) >droYak2.chr3L 7111743 101 + 24197627 ----------AGCAGGUGGUGUCGGUGGCAUAGGAGGCACCAGGUAUCGCAAAUUGCGGGCUAAACUCAGGAAGCAGUUGCAUUGGCUGCAU--GUGGCAGCCGAAAAUGCGG ----------.(((.(((((..(((((.(......).)))).)..))))).((((((...((.......))..))))))...((((((((..--...))))))))...))).. ( -37.00, z-score = -1.39, R) >droEre2.scaffold_4784 9213022 101 + 25762168 ----------AGGAGGUGGUGUCAGUGGCAUAGGAGGUACUAAGUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAGUUGCAUUGGCUGCAU--GUGGCAGCCGAAAAUGCGG ----------..(((....((((((((.(......).))))......(((.....)))))))...))).(....)...((((((((((((..--...))))))))...)))). ( -32.20, z-score = -1.74, R) >droWil1.scaffold_180916 1824283 113 - 2700594 UACAAGGAAAAAGAGUUGGAGUUGGACACGGUGGUAGCAACAAAUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAAUUGUAUUGGCUGCAUCAGGAGCAGAUGCAGGCGCAG (((((.......(((((...(((.(.((..((((((........))))))....))).)))..))))).(....)..)))))..(.(((((((.......))))))).).... ( -31.20, z-score = -2.76, R) >droGri2.scaffold_15110 16148753 104 - 24565398 ----UGGAAUUGGCAUUGGGAUUGG---CAUCGGCAACAGCAAAUAUCGCAAAUUACGUGCGAAACUCAGGAAACAAAUGUAUUGCCUGCA--AUUGGCGGCGACAGCAGCAG ----........((..((((.((.(---(((.(....).((.......)).......)))).)).))))(....)...(((.(((((.((.--....)))))))..))))).. ( -23.90, z-score = 0.78, R) >consensus __________AGGAGGUGGUGUCGGCUCCAUAGGAGGCACUAAGUAUCGCAAAUUGCGGGCAAAACUCAGGAAACAGUUGCAUUGGCUGCAU__GUGGCAGCCGAAAAUGCGG ............(((.(((((((............)))))))....((((.....))))......))).(....)...((((((((((((.......))))))...)))))). (-22.55 = -22.79 + 0.23)
| Location | 6,541,915 – 6,542,016 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.60 |
| Shannon entropy | 0.42680 |
| G+C content | 0.51475 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -14.61 |
| Energy contribution | -16.24 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6541915 101 - 24543557 CCGCAUUUUCGGCUGCCAC--AUGCAGCCAAUGCAACUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUACUUAGUGCCUCCUAUGGAGCCGACACUACCUCCU---------- ..(((((...((((((...--..)))))))))))...((((..((((((.((((.........)))).)))))).(.((((...)))).))))).........---------- ( -28.30, z-score = -2.42, R) >droSim1.chr3L 6012848 101 - 22553184 CCGCAUUUUCGGCUGCCAC--AUGCAGCCAAUGCAACUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUACUUAGUGCCUCCUAUGGAGCCGACACUACCUCCU---------- ..(((((...((((((...--..)))))))))))...((((..((((((.((((.........)))).)))))).(.((((...)))).))))).........---------- ( -28.30, z-score = -2.42, R) >droSec1.super_2 6478483 101 - 7591821 CCGCAUUUUCGGCUGCCAC--AUGCAGCCAAUGCAACUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUACUUAGUGCCUCCUAUGGAGCCGACACUACCUCCU---------- ..(((((...((((((...--..)))))))))))...((((..((((((.((((.........)))).)))))).(.((((...)))).))))).........---------- ( -28.30, z-score = -2.42, R) >droYak2.chr3L 7111743 101 - 24197627 CCGCAUUUUCGGCUGCCAC--AUGCAGCCAAUGCAACUGCUUCCUGAGUUUAGCCCGCAAUUUGCGAUACCUGGUGCCUCCUAUGCCACCGACACCACCUGCU---------- ..(((((...((((((...--..)))))))))))((((........)))).(((.(((.....))).....(((((.(......).))))).........)))---------- ( -25.90, z-score = -1.15, R) >droEre2.scaffold_4784 9213022 101 - 25762168 CCGCAUUUUCGGCUGCCAC--AUGCAGCCAAUGCAACUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUACUUAGUACCUCCUAUGCCACUGACACCACCUCCU---------- ..(((((...((((((...--..))))))))))).........((((((.((((.........)))).)))))).............................---------- ( -23.90, z-score = -2.54, R) >droWil1.scaffold_180916 1824283 113 + 2700594 CUGCGCCUGCAUCUGCUCCUGAUGCAGCCAAUACAAUUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUAUUUGUUGCUACCACCGUGUCCAACUCCAACUCUUUUUCCUUGUA ....(.(((((((.......))))))).)..(((((.........((((((((..(((.....(((((....))))).......)))..)))....))))).......))))) ( -22.49, z-score = -1.92, R) >droGri2.scaffold_15110 16148753 104 + 24565398 CUGCUGCUGUCGCCGCCAAU--UGCAGGCAAUACAUUUGUUUCCUGAGUUUCGCACGUAAUUUGCGAUAUUUGCUGUUGCCGAUG---CCAAUCCCAAUGCCAAUUCCA---- ..((.((....)).)).(((--((((((((((((....)).....((((.(((((.......))))).))))...))))))(((.---...)))....)).)))))...---- ( -19.80, z-score = 1.29, R) >consensus CCGCAUUUUCGGCUGCCAC__AUGCAGCCAAUGCAACUGUUUCCUGAGUUUUGCCCGCAAUUUGCGAUACUUAGUGCCUCCUAUGGAGCCGACACCACCUCCU__________ ..(((((...((((((.......))))))))))).........((((((.((((.........)))).))))))....................................... (-14.61 = -16.24 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:20 2011