| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,537,182 – 6,537,274 |
| Length | 92 |
| Max. P | 0.987060 |
| Location | 6,537,182 – 6,537,274 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Shannon entropy | 0.48564 |
| G+C content | 0.40526 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.53 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.987060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6537182 92 + 24543557 UCUUUCUAUCUCUAUCU----GGGCCGGAACUCUUUCUAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGGUUUGACAGUUAUGGCACACAGAUAUU ............(((((----(....((((....))))...(((((..(((((.((((.(......)))))..)))))..)))))...)))))).. ( -23.20, z-score = -2.54, R) >droWil1.scaffold_180916 1818759 83 - 2700594 --------UCCGAAUAC----UUUUUUCAACCA-UUGUAUUGCAAUUUCUAUUGGAAAUGCAACUUUGUGGGUGGUUGUCACAGCAAACAGUUUUU --------...(((.((----(.(((.(..(((-(....(((((.((((....)))).)))))....))))(((.....))).).))).))).))) ( -15.20, z-score = -0.08, R) >droEre2.scaffold_4784 9208483 82 + 25762168 UCUUUCUAUCUCUAUCU----GUGCCGGAACUCCUUCUAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGGUUUGACAGUUAUGGCA---------- .................----.....((....)).......(((((..(((((.((((.(......)))))..)))))..))))).---------- ( -17.60, z-score = -2.20, R) >droYak2.chr3L 7107170 96 + 24197627 UCUUUCUAUCUCUAUCUUUCUGUGCCGGAACUGCUUCCAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGCUUUGACAGUUAUGGCACACACACAUU ....................((((..((((....))))...(((((..(((((.((............))...)))))..))))).....)))).. ( -18.30, z-score = -1.49, R) >droSec1.super_2 6473818 92 + 7591821 UCUUUCUAUCUCUAUCU----GUGCCGGAACUCUUUCUAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGGUUUGACAGUUAUGGCACACAGAUAUU ............(((((----(((..((((....))))...(((((..(((((.((((.(......)))))..)))))..))))).)))))))).. ( -26.60, z-score = -4.40, R) >droSim1.chr3L 6008189 92 + 22553184 UCUUUCUAUCUCUAUCU----GCGCCGGAACUCUUUCUAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGGUUUGACAGUUAUGGCACACAGAUAUU ............(((((----(.(..((((....))))...(((((..(((((.((((.(......)))))..)))))..))))).).)))))).. ( -22.70, z-score = -2.92, R) >consensus UCUUUCUAUCUCUAUCU____GUGCCGGAACUCUUUCUAACGCCAUCUUUGUUUGCCAUGUUGUUUCUGGUUUGACAGUUAUGGCACACAGAUAUU ..........................((((....))))...(((((..(((((.((((.(......)))))..)))))..)))))........... (-11.56 = -11.53 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:18 2011