| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,511,442 – 6,511,537 |
| Length | 95 |
| Max. P | 0.867514 |
| Location | 6,511,442 – 6,511,537 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 84.35 |
| Shannon entropy | 0.30438 |
| G+C content | 0.40597 |
| Mean single sequence MFE | -26.81 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.72 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6511442 95 - 24543557 AGUGGAAAAUCGCAGGGGGAAUGCGAGAUUUUCUAUUUCGGGCCCUGCCUGCAGUCUAGAUAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((......(((((.((..(.((((((.....)))))).)..)).)))))........((((((.....))))))........))))...... ( -28.80, z-score = -1.87, R) >droAna3.scaffold_13337 2839987 94 + 23293914 ACUUGCCACUGAGUAAGAGAUUUCCCCUCUUUUAUUUUCGGAUCUUGCC-GCAGUCUCGAUAUCCGAGCUGAAUAUAAAUGAUUCCCACAUUAUU ..........((((((((((.......))))))))))..(((((.....-.(((.((((.....))))))).........))))).......... ( -17.46, z-score = -1.18, R) >droEre2.scaffold_4784 9181609 95 - 25762168 AGUGGAAAAUCGCAGGGGGAAAACGAGAUUUUCUAUUUUGGUCCCUGCCUGCAGUCUUGAAAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((......(((((((((...((((((.....)))))).))))..))))).........(((((.....))))).........))))...... ( -27.80, z-score = -2.44, R) >droYak2.chr3L 7080746 95 - 24197627 AGUGGAAAAUCGCAGGGGGAAAACGAGAUUUUCUAUUUUGGUCGCUGCCUGCAGUCUUGAUAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((......(((((.((....((((((.....))))))....)).)))))........((((((.....))))))........))))...... ( -27.20, z-score = -2.27, R) >droSec1.super_2 6448366 95 - 7591821 AGUGGAAAAUUGCAGGGGGAAUGCGAGAUUUUCUAUUUCGGGCCCUGCCUGCAGUCUAGAUAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((...((((((((.((..(.((((((.....)))))).)..)).)))))))).....((((((.....))))))........))))...... ( -30.80, z-score = -2.49, R) >droSim1.chr3L 5982752 95 - 22553184 AGUGGAAAAUCGCAGGGGGAAUGCGAGAUUUUCUAUUUCGGGCCCUGCCUGCAGUCUAGAUAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((......(((((.((..(.((((((.....)))))).)..)).)))))........((((((.....))))))........))))...... ( -28.80, z-score = -1.87, R) >consensus AGUGGAAAAUCGCAGGGGGAAUGCGAGAUUUUCUAUUUCGGGCCCUGCCUGCAGUCUAGAUAUGUGUAUUGCAUAUAAAUUAUUCCCACAUCAUU .((((......(((((.((..(.((((((.....)))))).)..)).))))).......((((((.....)))))).........))))...... (-18.49 = -19.72 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:16 2011