| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,501,301 – 6,501,402 |
| Length | 101 |
| Max. P | 0.584666 |
| Location | 6,501,301 – 6,501,402 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.95 |
| Shannon entropy | 0.47066 |
| G+C content | 0.36045 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -8.50 |
| Energy contribution | -8.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6501301 101 - 24543557 ----------------GCCGUCUGUGUGUCGGUGAGUCUGUGUGCGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG ----------------..(((((.((.....(((((....(((...(((..((((((((((((((.....)).))))))))))))..))).))).....)))))..)).)))))... ( -23.90, z-score = -2.42, R) >droSim1.chr3L 5972455 101 - 22553184 ----------------GCCGUCUGUGUGUCGAUGAGCCUGUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG ----------------..(((((.((.....(((((....(((...(((..((((((((((((((.....)).))))))))))))..))).))).....)))))..)).)))))... ( -22.90, z-score = -2.75, R) >droSec1.super_2 6438499 101 - 7591821 ----------------GCCGUCUGUGUGUCGAUGAGCCUGUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG ----------------..(((((.((.....(((((....(((...(((..((((((((((((((.....)).))))))))))))..))).))).....)))))..)).)))))... ( -22.90, z-score = -2.75, R) >droEre2.scaffold_4784 9171389 101 - 25762168 --------GCCGUCUGUGUGUCUGUGAGUCA--------GUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG --------..(((((.((....((((((..(--------((...((((...((((((((((((((.....)).)))))))))))).....))))..))))))))).)).)))))... ( -24.20, z-score = -3.17, R) >droYak2.chr3L 7070089 117 - 24197627 GCCGUCUCUGUGUCUGUGUGUCUGUGAGUCAGUCAGCUUGUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG ..((((((((.....(((((.....((((..((.(((........))).))((((((((((((((.....)).))))))))))))...........)))).)))))))))))))... ( -27.90, z-score = -3.02, R) >droAna3.scaffold_13337 2830062 83 + 23293914 -------------------------------GCCAGCC-GUGUGGGCUG--GCAUUUUGUUGCCAACUUAUGUGCCAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG -------------------------------(((((((-.....)))))--))((((((((((....(((((...)))))...))))))))))..(((((((......)))).))). ( -27.60, z-score = -4.06, R) >dp4.chrXR_group3a 555432 103 - 1468910 --------------GCCGUGUCCCUGUCCGUGUAUCCGUGUAUGUGUUAACGCAUUUUGUAGCCAACUUAUGCGCCAUAAAAUGUAAUAAAAUAAAACUCUCGUAUUAGAAAUGUUG --------------..(((.((......((..(((....)))..)).....(((((((((.((((.....)).)).))))))))).......................)).)))... ( -12.20, z-score = 0.81, R) >droPer1.super_23 567276 94 - 1662726 -----------------------CUGUCCGUGUGUCCGUGUAUGUGUUAACGCAUUUUGUAGCCAACUUAUGCGCCAUAAAAUGUAAUAAAAUAAAACUCUCGUAUUAGAAAUGUUG -----------------------(((..((.(.((...(((...((((...(((((((((.((((.....)).)).)))))))))))))..)))..)).).))...)))........ ( -12.80, z-score = 0.23, R) >droGri2.scaffold_15110 16110274 92 + 24565398 -------------------------GUCUCUCUGUGUGUAUGUGAAUGUACGCAUUUGGCAGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCACAUAUUAGAAAUGCUU -------------------------.....((((...((((((((...(((((((..(........)..)))))))......(((......)))....))))))))))))....... ( -15.80, z-score = -0.62, R) >consensus ___________________GUCUGUGUGUCGGUGAGCCUGUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG ...................................................(((((((((.((((.....)).)).)))))))))................................ ( -8.50 = -8.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:13 2011