| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,494,482 – 6,494,587 |
| Length | 105 |
| Max. P | 0.739968 |
| Location | 6,494,482 – 6,494,587 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.23 |
| Shannon entropy | 0.20631 |
| G+C content | 0.41249 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -21.44 |
| Energy contribution | -22.32 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6494482 105 + 24543557 GCAACAUUUCGACGGCUUUACCAGCUGUGUGCUACUAGUAUUCCACUUUUUUUUAUAU----AUAUAGGUUGUACGAUUGCAGUUCGCUGGCCGCUUUUGUUGCUUUAG ((((((....(.(((((...(.((((((((((.(((.((((.................----)))).))).))))....)))))).)..))))))...))))))..... ( -27.03, z-score = -1.94, R) >droEre2.scaffold_4784 9164269 98 + 25762168 GCAACAUUUCGACGGCUUUACCAGCUGUAUGCUACUAGUAUUCCUCUUUUUUU-----------AUGGGUUGUACGAUUGCAGUUCGCUGGCUGCUUUUGUUGCUUUAG ((((((.......(((....(((((....(((.....((((..(((.......-----------..)))..))))....)))....)))))..)))..))))))..... ( -27.00, z-score = -2.23, R) >droYak2.chr3L 7062861 103 + 24197627 GCAACAUUUCGACGGCUUUACCAGCUGUGUGCUACUAGUAUUUCCCUCUUUAUUAU------AUAUAUGUUGUACGAUUGCAGUUUGGCGACUGCUUUUGUUGCUUUAG ((((((..((.((((((.....))))))((((.((..((((...............------))))..)).))))))..((((((....))))))...))))))..... ( -24.76, z-score = -1.72, R) >droSec1.super_2 6431659 104 + 7591821 GAAACAUUUCGACGGCUUUACCAGCUGUGUGCUACUAGUAUUCCACGUUUUUUUUUU-----AUAUAGGUUGUACGAUUGCAGUUCGCUGGCUGCUUUUGUUGCUGUAG (((((......((((((.....))))))((((.....)))).....)))))......-----.(((((.....((((..(((((......)))))..))))..))))). ( -22.20, z-score = 0.17, R) >droSim1.chr3L 5965650 109 + 22553184 GCAACAUUUCGGCGGCUUUACCAGCUGUGUGCUACUAGUAUUCCACGUUUUUUUUUUUUUAUAUAUAGGUUGUACGAUUGCAGUUCGCUGGCUGCUUUUGUUGCUGUAG ((((((....(((((((...(.((((((((((.(((.((((.....................)))).))).))))....)))))).)..)))))))..))))))..... ( -29.50, z-score = -1.80, R) >consensus GCAACAUUUCGACGGCUUUACCAGCUGUGUGCUACUAGUAUUCCACUUUUUUUUAU______AUAUAGGUUGUACGAUUGCAGUUCGCUGGCUGCUUUUGUUGCUUUAG ((((((..((.((((((.....))))))((((.(((.((((.....................)))).))).))))))..(((((......)))))...))))))..... (-21.44 = -22.32 + 0.88)
| Location | 6,494,482 – 6,494,587 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.23 |
| Shannon entropy | 0.20631 |
| G+C content | 0.41249 |
| Mean single sequence MFE | -22.74 |
| Consensus MFE | -18.76 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6494482 105 - 24543557 CUAAAGCAACAAAAGCGGCCAGCGAACUGCAAUCGUACAACCUAUAU----AUAUAAAAAAAAGUGGAAUACUAGUAGCACACAGCUGGUAAAGCCGUCGAAAUGUUGC .....((((((...(((((..((((.......))))...........----..................(((((((........)))))))..))))).....)))))) ( -23.10, z-score = -1.24, R) >droEre2.scaffold_4784 9164269 98 - 25762168 CUAAAGCAACAAAAGCAGCCAGCGAACUGCAAUCGUACAACCCAU-----------AAAAAAAGAGGAAUACUAGUAGCAUACAGCUGGUAAAGCCGUCGAAAUGUUGC .....((((((...((((........))))...............-----------.......((((..(((((((........)))))))...)).))....)))))) ( -22.00, z-score = -1.85, R) >droYak2.chr3L 7062861 103 - 24197627 CUAAAGCAACAAAAGCAGUCGCCAAACUGCAAUCGUACAACAUAUAU------AUAAUAAAGAGGGAAAUACUAGUAGCACACAGCUGGUAAAGCCGUCGAAAUGUUGC .....((((((...(((((......))))).................------........((.((...(((((((........)))))))...)).))....)))))) ( -26.50, z-score = -3.31, R) >droSec1.super_2 6431659 104 - 7591821 CUACAGCAACAAAAGCAGCCAGCGAACUGCAAUCGUACAACCUAUAU-----AAAAAAAAAACGUGGAAUACUAGUAGCACACAGCUGGUAAAGCCGUCGAAAUGUUUC .......((((...((((........)))).................-----..........(((((..(((((((........)))))))...))).))...)))).. ( -17.70, z-score = -0.07, R) >droSim1.chr3L 5965650 109 - 22553184 CUACAGCAACAAAAGCAGCCAGCGAACUGCAAUCGUACAACCUAUAUAUAAAAAAAAAAAAACGUGGAAUACUAGUAGCACACAGCUGGUAAAGCCGCCGAAAUGUUGC .....((((((...((((........)))).................................((((..(((((((........)))))))...)))).....)))))) ( -24.40, z-score = -1.91, R) >consensus CUAAAGCAACAAAAGCAGCCAGCGAACUGCAAUCGUACAACCUAUAU______AAAAAAAAAAGUGGAAUACUAGUAGCACACAGCUGGUAAAGCCGUCGAAAUGUUGC .....((((((...((((........))))...................................((..(((((((........)))))))...)).......)))))) (-18.76 = -19.00 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:09 2011