| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,463,617 – 6,463,709 |
| Length | 92 |
| Max. P | 0.823982 |
| Location | 6,463,617 – 6,463,709 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.33 |
| Shannon entropy | 0.64180 |
| G+C content | 0.37091 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -9.60 |
| Energy contribution | -8.90 |
| Covariance contribution | -0.70 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6463617 92 + 24543557 -------UCUUAUAUCACUCUGUAUUUGCUGGUUGGUUCCACAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAGCCA--------- -------..........................(((((((((((((((((....))))(((((((.....)))))))......)))..))).)))))))--------- ( -20.60, z-score = -0.65, R) >droSim1.chr3L 5935054 92 + 22553184 -------UCUUAUAUCACUCUGUAUUUGCUGGUUUGUUCCACAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAGCCA--------- -------.......................(((...((((((((((((((....))))(((((((.....)))))))......)))..)))))))))).--------- ( -19.90, z-score = -0.74, R) >droSec1.super_2 6401125 91 + 7591821 -------UCUUAUAUCACUCUGUAUUUGUUGGUUUGUUCCACAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAUCC---------- -------..........(((((((..((((((((.((((((.((((((((....)))).....)))).))).))).))))))))..)))).)))....---------- ( -18.10, z-score = -1.05, R) >droYak2.chr3L 7030464 98 + 24197627 -------UCUUAUGUCACUCUGUAUUUGUUGGUUUGUACCACAAGCGUGUUACUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAUAAACAGCCA--- -------....................((((.(((((.((((((((((((....))))(((((((.....)))))))......)))..))))).)))))))))..--- ( -21.30, z-score = -0.41, R) >droEre2.scaffold_4784 9129596 97 + 25762168 -------UCUUAUAUCAGUCUGUAUUUGUUGGUU-GUUCCACAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAGAAACAGCAA--- -------..................((((((.((-.((((((((((((((....))))(((((((.....)))))))......)))..))))))).)).))))))--- ( -24.70, z-score = -2.04, R) >droAna3.scaffold_13337 2791792 88 - 23293914 --------CUUAUAUCACUAUGGCGGCCCUGCU--GCUCCACAAGCGUGUUAAUGCACUAAUUGUUUUCGGCAAUUAAUCAAUGUUUAUGUGGGAGAG---------- --------(((..........((((((...)))--)))((((((((((((....))))(((((((.....)))))))......)))..))))))))..---------- ( -22.20, z-score = -0.84, R) >dp4.chrXR_group3a 503912 90 + 1468910 --------------CCAUCCAUCAAAGCGCGG---AGCGCG-AAGCGUGUUACUCCACUAAUUGUUUUCAGCAAUUAAUCAAUGUUUCCAUUGUGGGAGCGCGAGAAA --------------............((((..---((((((-...))))))..((((((((((((.....)))))))...((((....))))))))).))))...... ( -23.00, z-score = -0.63, R) >droPer1.super_23 513207 90 + 1662726 --------------CCAUCCAUCAAAGCGCAG---AGCGCG-AAGCGUGUUACUCCACUAAUUGUUUUCAGCAAUUAAUCAAUGUUUCCAUUGUGGGAGCGCGAGAAA --------------............((((..---((((((-...))))))..((((((((((((.....)))))))...((((....))))))))).))))...... ( -23.00, z-score = -1.20, R) >droVir3.scaffold_13049 10806123 90 + 25233164 UACGUGCUUCUAUAUCAUUUUUUACUGGCU------UUGCGUAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAA------------ .....(((..((..........))..)))(------(..(((((((((((....))))(((((((.....)))))))......)))))))..))..------------ ( -18.70, z-score = -0.90, R) >droMoj3.scaffold_6680 14754287 95 - 24764193 -------CCCUAUAUCAUUUUUUACUGACU------UUGCGUAAGCGUGUUAAUGCACUAAUUGUUUCUGGCAAUUAAUCAAUGUUUAUGCUUAUGUUUAUGUGGGAA -------.(((((((...........(((.------..((((((((((((....))))(((((((.....)))))))......))))))))....))).))))))).. ( -23.40, z-score = -2.79, R) >droGri2.scaffold_15110 16068471 90 - 24565398 UAUAAACUCCUAUAUCAUUUUUUAUGGGCU------UUUCGUAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAA------------ ........((((((........))))))((------(..(((((((((((....))))(((((((.....)))))))......))))))).)))..------------ ( -19.60, z-score = -2.11, R) >consensus _______UCUUAUAUCACUCUGUAUUGGCUGGU__GUUCCACAAGCGUGUUAAUGCACUAAUUGUUUUUGGCAAUUAAUCAAUGUUUAUGUGGGAGAA__________ ....................................(((((.((((((((....))))(((((((.....)))))))......)))).)).))).............. ( -9.60 = -8.90 + -0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:08 2011