| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,459,765 – 6,459,862 |
| Length | 97 |
| Max. P | 0.568705 |
| Location | 6,459,765 – 6,459,862 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.35 |
| Shannon entropy | 0.42043 |
| G+C content | 0.43692 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -9.21 |
| Energy contribution | -10.13 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6459765 97 + 24543557 AAGAUCAAAGAGCCAUCUUGCAAA-----AUGUCAGACAAACAUUGUCUC---AUUCUCU-AGCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCAGCUCCG .........((((....((((...-----..((.(((((.....))))).---)).....-.))))..........((((((((......))))))))..)))).. ( -19.70, z-score = -1.60, R) >dp4.chrXR_group3a 499117 102 + 1468910 AAGAUCAAAGGAGGAGGCAGCAAACGUCAGCGGCAGACAAACAUUGUCUC----UUCUUUUGGGGGAGACAUCAAAGGAAAUUUUAGACUCAGUUUUCAUGCCACA .....(((((((((((((((.....(((.......))).....)))))))----))))))))(((....)......(((((((........)))))))...))... ( -27.70, z-score = -2.22, R) >droAna3.scaffold_13337 2788036 98 - 23293914 AAGAUCAAAGACCCAUCUUGCAGA-----ACGUCAGACCAACAUUGUCUC---ACUCUCCCACCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCCGACUCG ..(.((.((((....))))...))-----.)(((.........(((((..---...........))))).......((((((((......))))))))..)))... ( -14.92, z-score = -0.35, R) >droEre2.scaffold_4784 9125808 97 + 25762168 AAGAUCAAAGAGCCAUCUCGCAAA-----ACGUCAGACAAACAUUGUCUC---AUUCUCU-AGCGACAACAUCAAAGGAAACUCAAUUCUCAGUUUUCCAGCUCCG .........((((....((((...-----..((.(((((.....))))).---)).....-.))))..........(((((((........)))))))..)))).. ( -17.40, z-score = -2.17, R) >droYak2.chr3L 7026577 100 + 24197627 AAGAUCAAAGAGCCAUCUCGCAAA-----AUGUCAGACAAACAUUGUCUCCUCAUUCUCU-AGCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCAGCUCCG .........((((....((((..(-----(((..(((((.....)))))...))))....-.))))..........((((((((......))))))))..)))).. ( -22.60, z-score = -2.88, R) >droSec1.super_2 6397302 97 + 7591821 AAGAUCAAAGAGCCAUCUCGCAAA-----ACGUCAGACAAACAUUGUCUC---AUUCUCU-AGCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCAGCUCCG .........((((....((((...-----..((.(((((.....))))).---)).....-.))))..........((((((((......))))))))..)))).. ( -21.10, z-score = -2.58, R) >droSim1.chr3L 5931220 97 + 22553184 AAGAUCAAAGAGCCAUCUCGCAAA-----ACGUCAGACAAACAUUGUCUC---AUUCUCU-AGCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCAGCUCCG .........((((....((((...-----..((.(((((.....))))).---)).....-.))))..........((((((((......))))))))..)))).. ( -21.10, z-score = -2.58, R) >droWil1.scaffold_180698 4965275 77 + 11422946 -AGAUCAAAGAGACCUCU----GA-----A---------AACAUUGUCUC---A-------GUCAGCCACAUCAAAGGAAAUUGUAGACUCAGUUUUUCUUACCCC -......((((((...((----((-----.---------......(((((---(-------((...((........))..)))).))))))))..))))))..... ( -13.71, z-score = -0.56, R) >consensus AAGAUCAAAGAGCCAUCUCGCAAA_____ACGUCAGACAAACAUUGUCUC___AUUCUCU_AGCGACAACAUCAAAGGAAACUGUAGCCUCAGUUUUCCAGCUCCG .........((......((((.............(((((.....))))).............)))).....))...((((((((......))))))))........ ( -9.21 = -10.13 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:07 2011