| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,428,893 – 6,428,989 |
| Length | 96 |
| Max. P | 0.995297 |
| Location | 6,428,893 – 6,428,989 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.05 |
| Shannon entropy | 0.45507 |
| G+C content | 0.44694 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -15.41 |
| Energy contribution | -15.97 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.79 |
| SVM RNA-class probability | 0.995297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6428893 96 - 24543557 GGGUGGGUGUGUUCAUGGGUUCUCUUCUCAUCUCGUGGCCUCCACAUCCACCAUACGCUCCAUAGGUUUUUUCUUAUUUUAUUCCAUACUAUUUUU .((((((((((.(((((((............)))))))....)))))))))).........(((((......)))))................... ( -23.80, z-score = -3.21, R) >droSim1.chr3L 5900881 96 - 22553184 GGGUGGGUGUGUUCAUGGGUUCUCUUCUCAUCUCGUGGCCUCCACAUCCACCAUACGCUCCAUAGGUUUUUUCUUAUUUUAUUCCAUACUAUUUUU .((((((((((.(((((((............)))))))....)))))))))).........(((((......)))))................... ( -23.80, z-score = -3.21, R) >droSec1.super_2 6366581 96 - 7591821 GGGUGGGUGUGUUCAUGGGUUCUCUUCUCAUCUCGUGGCCUCCACAUCCACCAUACGCUCCAUAGGUUUUUACUUAUUUUAUUCCAUACUAUUUUU .((((((((((.(((((((............)))))))....)))))))))).........((((((....))))))................... ( -25.10, z-score = -3.42, R) >droMoj3.scaffold_6680 14712958 77 + 24764193 GGGUGGGUGUGU--AUGGG-GCUUUGGGGGCCACA-GACAACUAUGUUGUGCACACACUCAACACACACAUCUGUA-UUGAU-------------- (((((.((((((--.((((-(((.....)))((((-(.((....)))))))......)))))))))).)))))...-.....-------------- ( -22.20, z-score = -0.09, R) >consensus GGGUGGGUGUGUUCAUGGGUUCUCUUCUCAUCUCGUGGCCUCCACAUCCACCAUACGCUCCAUAGGUUUUUUCUUAUUUUAUUCCAUACUAUUUUU .((((((((((.(((((((............)))))))....)))))))))).........(((((......)))))................... (-15.41 = -15.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:05 2011