| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,425,630 – 6,425,727 |
| Length | 97 |
| Max. P | 0.806027 |
| Location | 6,425,630 – 6,425,727 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Shannon entropy | 0.21669 |
| G+C content | 0.54309 |
| Mean single sequence MFE | -29.33 |
| Consensus MFE | -25.33 |
| Energy contribution | -26.05 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6425630 97 + 24543557 CAAACGUUGUCGCUGGGCGAUCGCGUAGCCGUUGCCAUAAUUGUUUAGUUAGCCCAAGCGGCCAAAAGCGUCCCGCCCCAGUCGAUUUCUCUGUUUU .....(..(((((((((((..(((...((((((....((((......)))).....)))))).....)))...)).))))).))))..)........ ( -30.70, z-score = -2.46, R) >droAna3.scaffold_13337 2754736 87 - 23293914 -----UUUGUCGCUGGGCGAUCGCAAAGCCGUUGCCAUAAUUGUUUAGUUAGCCGAGGCGGCCAAAAGCACCCCGCCCCAGUCU-UGGCUUUA---- -----......((((((((((.((((.....))))....)))))))))).((((((((((((............)))...))))-)))))...---- ( -25.00, z-score = 0.34, R) >droSec1.super_2 6363296 97 + 7591821 CAAACGUUGUCGCUGGGCGAUCGCGUAGCCGUUGCCAUAAUUGUUUAGUUAGCCCAAGCGGCCAAAAGCUUCCCGCCCCAGUCGAUUUCUCUGUUUU .....(..(((((((((((...((...((((((....((((......)))).....)))))).....))....)).))))).))))..)........ ( -27.20, z-score = -1.45, R) >droSim1.chr3L 5898045 97 + 22553184 CAAACGUUGUCGCUGGGCGAUCGCGUAGCCGUUGCCAUAAUUGUUUAGUUAGCCCAAGCGGCCAAAAGCGUCCCGCCCCAGUCGAUUUCUCUGUUUU .....(..(((((((((((..(((...((((((....((((......)))).....)))))).....)))...)).))))).))))..)........ ( -30.70, z-score = -2.46, R) >droYak2.chr3L 6990487 97 + 24197627 UAGACGUUGUCGCUGGGCGAUCGCCAAGCCGUUGCCAUAAUUGUUUAGUUAGCCCAAGCGGCCAAAAGCGUCCCGCCCCAGUCGAUUUCUUGGCUAU ..((((((((((((((((....((.((((.((((...)))).)))).))..)))).))))))....)))))).......((((((....)))))).. ( -30.00, z-score = -1.25, R) >droEre2.scaffold_4784 9091067 96 + 25762168 CAGACGUUGUCGCUGG-CGAUCGCGUAGCCGUUGCCAUAAUUGUUUAGUUGGCCCAAGCGGCCAAAAGCGUCCCGCCCCAGUCGAUUUCUCUGCUAU ((((.(..((((((((-((..(((...((((((((((............))))...)))))).....)))...))))..)).))))..))))).... ( -32.40, z-score = -2.16, R) >consensus CAAACGUUGUCGCUGGGCGAUCGCGUAGCCGUUGCCAUAAUUGUUUAGUUAGCCCAAGCGGCCAAAAGCGUCCCGCCCCAGUCGAUUUCUCUGUUUU .....(..(((((((((((..(((...((((((....((((......)))).....)))))).....)))...)).))))).))))..)........ (-25.33 = -26.05 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:04 2011