| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,413,450 – 6,413,520 |
| Length | 70 |
| Max. P | 0.894544 |
| Location | 6,413,450 – 6,413,520 |
|---|---|
| Length | 70 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 52.62 |
| Shannon entropy | 0.82465 |
| G+C content | 0.51630 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -7.65 |
| Energy contribution | -7.78 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6413450 70 - 24543557 UGACUUAACUCCAGCUUCCCAAAUACCUCCGAAGUGAGGUCCUGCCGGGGGAAUAAAAUGCCAAUCAAUC ...............(((((....(((((......)))))((....)))))))................. ( -12.90, z-score = 0.43, R) >droYak2.chrU 26136131 70 + 28119190 AGUUUUCACACCUGCCUCGCAUAGUCCGCCCAUGUGCGGAGCCCAAAGGGGGUGUGAACGCAAAUUCGCA .((.(((((((((((..((((((.........))))))..))((...))))))))))).))......... ( -25.90, z-score = -1.83, R) >dp4.Unknown_group_180 11575 69 - 35195 CACCUUCACGGCGCUCUCCCAUAAUCCUCCAAAGUGAGGGGAGCGUGGGGGAAUGAAGUGAAACCUGAC- ....(((((..((.((((((((..((((((.....).)))))..)))))))).))..))))).......- ( -27.80, z-score = -2.66, R) >triCas2.singleUn_1817 11171 70 - 22356 ACUUUUUACUCCCGCUUCCCAUAAACCUCCCCAGUUAGGACUAUUGGCCGGAAUGAAUAUCCAUGAAAUG ....((((.(((.(((....(((..(((........)))..))).))).))).))))............. ( -8.80, z-score = 0.21, R) >consensus AGUCUUCACUCCAGCCUCCCAUAAACCUCCCAAGUGAGGACCACAAGGGGGAAUGAAAUGCAAAUUAAC_ ..............(((((.....(((((......)))))......)))))................... ( -7.65 = -7.78 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:03 2011