| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,380,200 – 6,380,277 |
| Length | 77 |
| Max. P | 0.519945 |
| Location | 6,380,200 – 6,380,277 |
|---|---|
| Length | 77 |
| Sequences | 13 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Shannon entropy | 0.52483 |
| G+C content | 0.39254 |
| Mean single sequence MFE | -17.22 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.61 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6380200 77 + 24543557 -----------UUCGAC-UCGAAUGUUUGCGUUUUU-AUCUGG-CGCAAAAGUGUGAAAUUUUGACACGACGUCAAAGCAAUUUCCCGCUU -----------((((..-.))))..((((((((...-....))-))))))((((.(((((((((((.....)))))...)))))).)))). ( -19.10, z-score = -1.04, R) >droWil1.scaffold_180698 5037309 91 + 11422946 GUCAUCCUUCAUGUCUUCAUGUUUGUCUUGCUUUUUUAUCUGGGCUUAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUUUCGCUU (.((.....((((....))))..)).)..((((........))))....(((((.((((((((((((...))))))...)))))).))))) ( -15.40, z-score = -0.51, R) >dp4.chrXR_group3a 435078 74 + 1468910 ----------------CCCCUUUUGGGUUUUUUUUUUAUCUUG-CGAAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUCCCGCUU ----------------.(((....)))................-.....(((((.((((((((((((...))))))...)))))).))))) ( -16.40, z-score = -1.52, R) >droPer1.super_23 444175 74 + 1662726 ----------------CCCCUUUUGGGUUUUUUUUUUAUCUUG-CGAAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUCCCGCUU ----------------.(((....)))................-.....(((((.((((((((((((...))))))...)))))).))))) ( -16.40, z-score = -1.52, R) >droAna3.scaffold_13337 2733257 77 - 23293914 -----------CUCAUG-CGAAAUGUUUGCUUUCUU-AUCUCG-CAAAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUCUCGCUU -----------....((-(((.(((..........)-)).)))-))...(((((.((((((((((((...))))))...)))))).))))) ( -19.20, z-score = -2.22, R) >droEre2.scaffold_4784 9072323 77 + 25762168 -----------UUCGCC-UCGAAUGUUUGCGUUUUU-AUCUGG-CGCAAAAGUGUGAAAUUUUGACACGACGUCAAAGCAAUUUCCCGCUU -----------((((..-.))))..((((((((...-....))-))))))((((.(((((((((((.....)))))...)))))).)))). ( -19.10, z-score = -1.07, R) >droYak2.chr3L 6971042 78 + 24197627 -----------UUCGCC-UCGAAUGUUUGCGUUUUUUAUCUGG-CGCAAAAGUGUGAAAUUUUGACACGACGUCAAAGCAAUUUCCCGCUU -----------((((..-.))))..((((((((........))-))))))((((.(((((((((((.....)))))...)))))).)))). ( -19.40, z-score = -1.16, R) >droSec1.super_2 6344413 77 + 7591821 -----------UUCGCC-ACGAAUGUUUGCGUUUUU-AUCUGG-CGCAAAAGUGUGAAAUUAUGACACGACGUCAAAGCAAUUUCCCGCUU -----------(((((.-((.....((((((((...-....))-)))))).)))))))....((((.....))))((((........)))) ( -18.40, z-score = -0.82, R) >droSim1.chr3L 5879115 77 + 22553184 -----------UUCGCC-ACGAAUGUUUGCGUUUUU-AUCUGG-CGCAAAAGUGUGAAAUUUUGACACGACGUCAAAGCAAUUUCCCGCUU -----------..((((-(.(((((....)))))..-...)))-))...(((((.(((((((((((.....)))))...)))))).))))) ( -19.60, z-score = -1.12, R) >droMoj3.scaffold_6680 14687974 79 - 24764193 -----------UUCGUCAUCGACUCUGUUUGGCUUUUAUCUGG-CGCAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUUUCGGCU -----------...(((.((.((.((.(((((((.......))-).)))))).))))..((((((((...)))))))).........))). ( -15.80, z-score = 0.29, R) >droVir3.scaffold_13049 10739927 77 + 25233164 -----------UUCGUCAUCGAC--UGUUUGGCUUUUAUCUUG-CGCAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUUUCGCUU -----------.(((....))).--......(((((.((.(((-(((((((........))))).))))).)).)))))............ ( -16.60, z-score = -0.31, R) >droGri2.scaffold_15110 16009354 77 - 24565398 -----------UUCGUCAUCGAC--UGUUUGGCUUUUAUCUUG-CGAAAAAGUGUGAAAUUUUGACGCAAAGUCAAAGCAAUUUUUCGCUU -----------...((((.....--....)))).........(-(((((((.(((.....((((((.....))))))))).)))))))).. ( -18.30, z-score = -1.13, R) >apiMel3.Group6 9226786 77 - 14581788 -------------UUCCAUCCGAUUUCUCGAUUUUGUAUCGGA-AGAAAAGAUGUGAAAUUUCUCCGACAUUUAAUAUCCAUUUUAUACUU -------------(((((((...(((..((((.....))))..-)))...)))).)))................................. ( -10.10, z-score = 0.35, R) >consensus ___________UUCGCC_UCGAAUGUUUGCGUUUUUUAUCUGG_CGCAAAAGUGUGAAAUUUUGACGCAACGUCAAAGCAAUUUCCCGCUU .................................................(((((.(((((((((((.....))))))...))))).))))) ( -9.58 = -9.61 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:07:02 2011