| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,440,669 – 4,440,768 |
| Length | 99 |
| Max. P | 0.884963 |
| Location | 4,440,669 – 4,440,768 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.46 |
| Shannon entropy | 0.28022 |
| G+C content | 0.35054 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -16.11 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4440669 99 + 23011544 ------------------GGACGAUGAUGAUGAUAUUUUCUGAUAUUGUUCAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAACACG ------------------.((((.((((((..(((((....)))))..).)))))....((((((....))))))))))(((((..((..(.....)..))..)))))......... ( -19.60, z-score = -0.87, R) >droSim1.chr2L 4367768 99 + 22036055 ------------------GGACGAUGAUGAUGAUAUUUUCUGAUAUUGUUCAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAACACG ------------------.((((.((((((..(((((....)))))..).)))))....((((((....))))))))))(((((..((..(.....)..))..)))))......... ( -19.60, z-score = -0.87, R) >droSec1.super_5 2538630 99 + 5866729 ------------------GGACGAUGAUGAUGAUAUUUUCUGAUAUUGUUCAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAACACG ------------------.((((.((((((..(((((....)))))..).)))))....((((((....))))))))))(((((..((..(.....)..))..)))))......... ( -19.60, z-score = -0.87, R) >droYak2.chr2L 4474592 99 + 22324452 ------------------UGAUGAUGAUGAUGAUAUUUUCUGAUAUUGUUCAUUACAUUGUUGUGCUUUUACGACUAUUAUCCUUGAGUGAAGAACUGGCUACAGGAUGCUAACACG ------------------.((((.((((((..(((((....)))))..).)))))))))((((((....))))))...((((((..(((.(.....).)))..))))))........ ( -21.10, z-score = -1.68, R) >droEre2.scaffold_4929 4525109 99 + 26641161 ------------------UGAUGAUGAUGAUGAUAUUUUCUGAUAUUGUUCAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAACACG ------------------.((((.((((((..(((((....)))))..).)))))))))((((((....))))))(((((((((..((..(.....)..))..))))...))))).. ( -22.20, z-score = -2.02, R) >droAna3.scaffold_12943 1627201 93 - 5039921 -------------------CAUGAUGAUGAUGAUAUUUUCUGAUAUUUUUCAUUACAUUGUUGUGCUUUUAGGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUA----- -------------------.(((.((((((.((((((....))))))..))))))))).(((.((....)).)))...((((((..((..(.....)..))..))))))...----- ( -17.00, z-score = -0.36, R) >dp4.chr4_group3 2387052 96 - 11692001 ------------------UGGCGAUGAUGAUGAUAUUUUCUGAUAUUUUUCAUUACAUUGUUGUACUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCCACAGGAUGCUAAC--- ------------------(((((.((((((.((((((....))))))..)))))))...((((((....))))))....(((((((.(..(.....)..))).)))))))))..--- ( -21.40, z-score = -2.25, R) >droPer1.super_8 3470580 96 - 3966273 ------------------UGGCGAUGAUGAUGAUAUUUUCUGAUAUUUUUCAUUACAUUGUUGUACUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCCACAGGAUGCUAAC--- ------------------(((((.((((((.((((((....))))))..)))))))...((((((....))))))....(((((((.(..(.....)..))).)))))))))..--- ( -21.40, z-score = -2.25, R) >droVir3.scaffold_12963 2481627 109 - 20206255 -------AUACUUUUGCUUGACGAUGAUGAUGAUAUUUUCUGAUAUUUU-CAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAAAACC -------........((.((((((((((((.((((((....)))))).)-)))..)))))))).))............((((((..((..(.....)..))..))))))........ ( -22.80, z-score = -2.82, R) >droMoj3.scaffold_6500 9588570 116 - 32352404 UUACUUUUUUUUGCCUGACGAUGAUGAUGAUAAUAUUUUCUGAUAUUUU-CAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAAAACC ............((.((((((((.((((((.((((((....)))))).)-))))))))))))).))............((((((..((..(.....)..))..))))))........ ( -26.60, z-score = -4.21, R) >droGri2.scaffold_15252 2030074 116 - 17193109 -AUACUUUCGCCUAACGAUGAUGAUGAUGAUAAUAUUUUGUGAUAUUUUUCAUUACAUUGUUGUACUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUACUAAAACC -..((..(((....((((..(((.((((((.((((((....))))))..)))))))))..)))).......)))..))((((((..((..(.....)..))..))))))........ ( -24.80, z-score = -3.36, R) >consensus __________________UGACGAUGAUGAUGAUAUUUUCUGAUAUUUUUCAUUACAUUGUUGUGCUUUUACGACUGUUAUCCUUGAGUGAAGAACUUGCUACAGGAUGCUAACACG ........................((((((..(((((....)))))..).)))))....((((((....))))))...((((((..((..(.....)..))..))))))........ (-16.11 = -16.10 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:28 2011