| Sequence ID | dm3.chr2L |
|---|---|
| Location | 493,246 – 493,304 |
| Length | 58 |
| Max. P | 0.964637 |
| Location | 493,246 – 493,304 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.39655 |
| Mean single sequence MFE | -13.50 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 493246 58 + 23011544 GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... ( -13.50, z-score = -1.75, R) >droSim1.chr2L 499675 58 + 22036055 GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... ( -13.50, z-score = -1.75, R) >droSec1.super_14 476237 58 + 2068291 GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... ( -13.50, z-score = -1.75, R) >droYak2.chr2L 477904 58 + 22324452 GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... ( -13.50, z-score = -1.75, R) >droEre2.scaffold_4929 545661 58 + 26641161 GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... ( -13.50, z-score = -1.75, R) >consensus GAGGUUCUCCAAAGGUUGUUAUUGUUGCCUUUACAUAAGCUUCAAUAACUGCCAGUUG ..((....))...(((.(((((((..((..........))..))))))).)))..... (-13.50 = -13.50 + 0.00)
| Location | 493,246 – 493,304 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.39655 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 493246 58 - 23011544 CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... ( -13.60, z-score = -1.98, R) >droSim1.chr2L 499675 58 - 22036055 CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... ( -13.60, z-score = -1.98, R) >droSec1.super_14 476237 58 - 2068291 CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... ( -13.60, z-score = -1.98, R) >droYak2.chr2L 477904 58 - 22324452 CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... ( -13.60, z-score = -1.98, R) >droEre2.scaffold_4929 545661 58 - 26641161 CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... ( -13.60, z-score = -1.98, R) >consensus CAACUGGCAGUUAUUGAAGCUUAUGUAAAGGCAACAAUAACAACCUUUGGAGAACCUC (((..((..(((((((..((((......))))..)))))))..)).)))......... (-13.60 = -13.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:59 2011