| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,362,050 – 6,362,141 |
| Length | 91 |
| Max. P | 0.702659 |
| Location | 6,362,050 – 6,362,141 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.86 |
| Shannon entropy | 0.51808 |
| G+C content | 0.46838 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.34 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6362050 91 - 24543557 AGGCAGCUCAAAUAUGCCAAAAGCUGUGGUUCUGCUCGCUGUAGUUGACAAUUUCUUUGUGUGUUUGUAUAUCUGGGCAGCCUCCUCCUCC------------------- ((((.(((((.((((((....(((((..((.......))..))))).((((.....))))......)))))).))))).))))........------------------- ( -25.70, z-score = -1.72, R) >droSim1.chr3L 5860540 91 - 22553184 AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUAGUUGACAAUUUCUUUGUGUGUUUGUAUAUCUGGGCAGCCUCCUCCUCC------------------- ((((.(((((.((((((((((((..((((((((((.....))))..))))))..)))).)).....)))))).))))).))))........------------------- ( -26.30, z-score = -2.49, R) >droSec1.super_2 6326563 91 - 7591821 AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUAGUUGACAAUUUCUUUGUGUGUUUGUAUAUCUGGGCAGCCUCCACCUCC------------------- ((((.(((((.((((((((((((..((((((((((.....))))..))))))..)))).)).....)))))).))))).))))........------------------- ( -26.30, z-score = -2.10, R) >droYak2.chr3L 6951248 100 - 24197627 AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUCCUACUCGAUGUAGUUGACAAUUUCUUUGUGUGUUUGUAUAUCUCAGCAGCCACCUCCGCCUCCUCCGCC---------- .(((.((((((((((((..((((..((((((((((.....))))..))))))..)))))))))))))........))).)))..................---------- ( -25.40, z-score = -2.75, R) >droEre2.scaffold_4784 9052954 91 - 25762168 AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUUCUACUCGCUGUAGUUGACAAUUUCCUUGUGUGUUUGUGUAUCUCAGCAGCCUCCUCCUCC------------------- ((((.((((((((((((...(((..((((((((((.....))))..))))))...))))))))))))........))).))))........------------------- ( -21.10, z-score = -1.73, R) >droAna3.scaffold_13337 2714876 110 + 23293914 AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUUGUUGACAAUUUCUUUGUUUUUGUAUAUCUCGGGGCUACCUCUACUGCCUCCACCUAUCUCCACCUCC ((((((.....((((((.((((((.((((((..((........)).))))))......))))))))))))...((((...))))..)))))).................. ( -22.60, z-score = -1.11, R) >dp4.chrXR_group3a 410857 72 - 1468910 AGGCACCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUAGUUGACAAUUUUCUUGGGC------CCCCUCCGAC-------------------------------- .((((.........))))..(((..((((((((((.....))))..))))))...)))((..------..))......-------------------------------- ( -14.00, z-score = 0.31, R) >droPer1.super_23 419678 72 - 1662726 AGGCACCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUAGUUGACAAUUUUCUUGGGC------CUCCUCCGAC-------------------------------- ((((.((........((.....)).((((((((((.....))))..))))))......))))------))........-------------------------------- ( -14.20, z-score = 0.19, R) >droWil1.scaffold_180698 6365556 84 + 11422946 AGGUUGCUAAAAUAUGCCAAAAGCUGUUGUUCUGCUUGCUGUACUUGACAAUUUCUUUAAAC---CAUCCCCUCCGCCUACUCCUCU----------------------- .((((((........))..((((..((((((.(((.....)))...))))))..)))).)))---).....................----------------------- ( -11.80, z-score = -1.12, R) >consensus AGGCAGCUCAAAUAUGCCAAAAGCUGUUGUUCUGCUCGCUGUAGUUGACAAUUUCUUUGUGUGUUUGUAUAUCUCGGCAGCCUCCUCCUCC___________________ .((((.........))))....(..((((((((((.....))))..))))))..)....................................................... (-10.44 = -10.34 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:58 2011