| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,334,615 – 6,334,714 |
| Length | 99 |
| Max. P | 0.511364 |
| Location | 6,334,615 – 6,334,714 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 62.73 |
| Shannon entropy | 0.72696 |
| G+C content | 0.42250 |
| Mean single sequence MFE | -23.01 |
| Consensus MFE | -8.26 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6334615 99 - 24543557 AGAAUGU--GGGGAGAGGCA--UCUUCACUGUGGGAACAUUCCCAGUGGGUUGGGU-UGCAUUGGGAAGAUUAAUUCUGCAAGUGGAUUAAUAGAGUGACAAAG .....((--(((((......--)))))))....(..((.(((((((((.(......-).))))))))).((((((((.......))))))))...))..).... ( -28.00, z-score = -1.80, R) >droAna3.scaffold_13337 2686719 76 + 23293914 -----------GGAAAGUAA--UUCCCAGUGUGGGAACAUUCUCAGAGCUUUGU-------UUGAUUUGAUUAAGUCUGGAAGUGGAUUAG----GUGGC---- -----------.........--(((((.....)))))((((..((((.(((.((-------(......))).)))))))..))))......----.....---- ( -17.80, z-score = -0.74, R) >droEre2.scaffold_4784 9024344 94 - 25762168 AGAAUGU--GGCGAGAGUCU--UCCUCACUGUGGGAACAUUCCCAGUGUGUUAUGUGGGGAUUGGGAAGAUUAAUUC------CGGAUUAAUAGAGUGACAAAG .......--(((....))).--....(((((.((((...)))))))))((((((.((..((((.((((......)))------).))))..))..))))))... ( -26.10, z-score = -1.17, R) >droYak2.chr3L 6922384 103 - 24197627 AGAAUGUAAGGGGAGAGUCUUCUCUUUACUGUGGGAACAUUCCCAGUUUGUUGUGU-UGGAUUGGUUAGAUUAAUUCUGCAAGUGGAUUAAUAGAGUGACAAAG .....((((((((((....))))))))))(((((((....))))((((..((.(((-.((((((((...)))))))).)))))..)))).........)))... ( -24.90, z-score = -0.81, R) >droSec1.super_2 6299472 99 - 7591821 AGAAUGU--GGGGAGAGGCU--UCUUCGCUGUGGGAACAUUUCCAGUGGGUUGAGU-UGCAUUGGGAAGAUUAAUUCUACAAGUGGAUUAAUAGAGUGACAAAG .....((--((((((....)--)))))))....(..((.(((((((((.(......-).))))))))).((((((((.......))))))))...))..).... ( -24.50, z-score = -1.08, R) >droSim1.chr3L 5832655 99 - 22553184 AGAAUGU--GGGGAGAGGCU--UCUUCGCUGUGGGAACAUUCCCAGUGGGUUGGGU-UGCAUUGGGAAGAUUAAUUCUGCAAGUGGAUUAAUAGAGUGGCAAAG .....((--((((((....)--)))))))(((.(.....(((((((((.(......-).))))))))).((((((((.......))))))))....).)))... ( -26.60, z-score = -0.93, R) >droGri2.scaffold_15110 15962816 77 + 24565398 ----------------------UGACAGGAAUGUGAA-AUUUGUAUUUUUUGAUGGGCUUACGCACUGAGAGAACUUUCGAAAGUCAUAAAGCAUAUAAA---- ----------------------........(((((..-.(((((..(((((((.((.((((.....))))....)).)))))))..))))).)))))...---- ( -13.20, z-score = -0.62, R) >consensus AGAAUGU__GGGGAGAGGCU__UCUUCACUGUGGGAACAUUCCCAGUGGGUUGUGU_UGCAUUGGGAAGAUUAAUUCUGCAAGUGGAUUAAUAGAGUGACAAAG .........................(((((.(((((....)))))........................((((((((.......))))))))..)))))..... ( -8.26 = -8.67 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:55 2011