| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,318,462 – 6,318,565 |
| Length | 103 |
| Max. P | 0.619091 |
| Location | 6,318,462 – 6,318,565 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 70.76 |
| Shannon entropy | 0.46941 |
| G+C content | 0.29595 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -10.61 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6318462 103 - 24543557 UUCAUAAUCAUCAGAUAGGGACUGAUUCACAUUUCAGUCUUUUUAAGCUGAUUGCAAAUGCGUAAAU-UAAAUUUUAUGAGUGUUUCCUACCUGUGUGAUAAUA .........((((.(((((((((((........))))))..........((..(((....((((((.-.....))))))..))).))...))))).)))).... ( -24.60, z-score = -2.35, R) >droSim1.chr3L 5817229 103 - 22553184 UUCAUAAUCAACAGAUAGGGACUGAUUCACAUUUUAGCCUUUUUAAGCUGAUUGCAAAUGCGUAAAU-UUAAUUUUAUGAGUGUUUCCUGCCUGUGUGAUAAUA ......((((((((.((((((............(((((........)))))..(((....((((((.-.....))))))..))))))))).)))).)))).... ( -21.30, z-score = -1.10, R) >droSec1.super_2 6284951 100 - 7591821 ---AUAAUCAACAGAUAGGAACUGAUUCACAUUUUAGCUGUUUUAAGCUGAUUGCAAAUGCGUAAAU-UUAAUUUUAUGAGUGUUUCCUGCUUGUGUGAUAAUU ---...((((((((.((((((............((((((......))))))..(((....((((((.-.....))))))..))))))))).)))).)))).... ( -22.40, z-score = -1.65, R) >droGri2.scaffold_15110 15948983 91 + 24565398 --UUUAAUUAUCAGAUGUCAAUUGAUAUUUAUUUUAUUC-------GUUGAGUGU-AAUAAGUAAACAUAAGCUAGGUAAGGAUUACUCGGUUUGUUUAUA--- --...........((((((....))))))((((.(((((-------...))))).-)))).(((((((..(((..((((.....))))..)))))))))).--- ( -15.10, z-score = -0.91, R) >consensus __CAUAAUCAACAGAUAGGAACUGAUUCACAUUUUAGCCUUUUUAAGCUGAUUGCAAAUGCGUAAAU_UAAAUUUUAUGAGUGUUUCCUGCCUGUGUGAUAAUA ......((((((((.((((((......(((...(((((........))))).(((....)))..................))).)))))).)))).)))).... (-10.61 = -9.68 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:54 2011