| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,312,299 – 6,312,391 |
| Length | 92 |
| Max. P | 0.553743 |
| Location | 6,312,299 – 6,312,391 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 87.29 |
| Shannon entropy | 0.23689 |
| G+C content | 0.42729 |
| Mean single sequence MFE | -27.94 |
| Consensus MFE | -23.06 |
| Energy contribution | -23.06 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6312299 92 + 24543557 -------------------ACAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------------.(((.(...((.((((((.((....)).))))))---.))..).))).((((((((((((....((((((......)))))))))))).)))))) ( -27.50, z-score = -1.34, R) >droSim1.chr3L 5809643 92 + 22553184 -------------------ACAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------------.(((.(...((.((((((.((....)).))))))---.))..).))).((((((((((((....((((((......)))))))))))).)))))) ( -27.50, z-score = -1.34, R) >droSec1.super_2 6278931 92 + 7591821 -------------------ACAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------------.(((.(...((.((((((.((....)).))))))---.))..).))).((((((((((((....((((((......)))))))))))).)))))) ( -27.50, z-score = -1.34, R) >droYak2.chr3L 6898119 98 + 24197627 -------------ACAAAGGCAACGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------.(((.(.(((((.((..(((((...))))).......)))---)))).).))).((((((((((((....((((((......)))))))))))).)))))) ( -28.10, z-score = -0.74, R) >droEre2.scaffold_4784 9002918 92 + 25762168 -------------------ACAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------------.(((.(...((.((((((.((....)).))))))---.))..).))).((((((((((((....((((((......)))))))))))).)))))) ( -27.50, z-score = -1.34, R) >droAna3.scaffold_13337 2668608 111 - 23293914 AGAUACUCGUACUUCACUGGCAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU .............(((.((((....)).((.((((((.((....)).))))))---.))..)).)))((((((((((((....((((((......)))))))))))).)))))) ( -28.80, z-score = -0.21, R) >droPer1.super_23 362892 92 + 1662726 ----------------------GUGGCUGUGGCAUUUCAUGCUCAUCAAAUGCUGCGUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU ----------------------((.(.((..((((((.((....)).))))))..)).).)).....((((((((((((....((((((......)))))))))))).)))))) ( -31.30, z-score = -1.33, R) >droWil1.scaffold_180698 5110840 92 + 11422946 -------------------AUCAAGCAUUUGGCAUUUCAUGCCCAUCAAAUGC---GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU -------------------.(((((((((((((((...)))))....))))))---.))))......((((((((((((....((((((......)))))))))))).)))))) ( -31.50, z-score = -2.65, R) >droVir3.scaffold_13049 10631413 87 + 25233164 ------------------------UGUUGUAGCAUUUCAUGCCCAUCAAAUGC---AUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU ------------------------(((((..((((((.((....)).))))))---..)))))....((((((((((((....((((((......)))))))))))).)))))) ( -26.40, z-score = -1.54, R) >droMoj3.scaffold_6680 14617834 87 - 24764193 ------------------------UGCUGUAGCAUUUCAUGCCCAUCAAAUGC---AUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU ------------------------.......((((((.((....)).))))))---...........((((((((((((....((((((......)))))))))))).)))))) ( -24.80, z-score = -0.86, R) >droGri2.scaffold_15110 15943591 87 - 24565398 ------------------------UGUUGUAGCAUUUCAUGCCCAUCAAAUGC---AUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU ------------------------(((((..((((((.((....)).))))))---..)))))....((((((((((((....((((((......)))))))))))).)))))) ( -26.40, z-score = -1.54, R) >consensus ___________________ACAAAGGCAAAGGCAUUUCAUGCUCAUCAAAUGC___GUUGACAUUGAACAAUUGCGCGUAAUGUUGUCGUACACUUGACAAGCGCGCAAAUUGU ...............................((((((.((....)).))))))..............((((((((((((....((((((......)))))))))))).)))))) (-23.06 = -23.06 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:52 2011