| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,278,188 – 6,278,260 |
| Length | 72 |
| Max. P | 0.608524 |
| Location | 6,278,188 – 6,278,260 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 61.09 |
| Shannon entropy | 0.76053 |
| G+C content | 0.45687 |
| Mean single sequence MFE | -14.74 |
| Consensus MFE | -6.02 |
| Energy contribution | -6.76 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6278188 72 + 24543557 ---AGCAUAGAUAGCUCGCAAAAUGAUGCUCGCAACACUGUGGUGUUGCACCUAGCACAGAGCCCAGAAAAAACC-- ---..........(((((((......)))..(((((((....)))))))..........))))............-- ( -19.20, z-score = -1.56, R) >droAna3.scaffold_13337 2631747 70 - 23293914 UUCGUUAACUCAACCCGAAAACCUGCAACAUCGAACUCUUGCAACCUGAAACUAUCCCAGCGCCAAGAGC------- ((((...........))))................((((((....(((.........)))...)))))).------- ( -7.50, z-score = -0.63, R) >droEre2.scaffold_4784 8968313 70 + 25762168 ---AGCAUAAAAAGCUUGCAAAAUGAAGCUUGCAACACUGUAGUGUUGCACCUAGCCCAGAGCCCAAAAAAGC---- ---.((.....((((((........))))))(((((((....))))))).....)).................---- ( -17.40, z-score = -1.54, R) >droYak2.chr3L 6862738 74 + 24197627 ---AUUAACAAAAGCUGGCAAAAUGUUGCUGGCUACACUGUAGUGUUGCACCUAGCCCAGAGCCCAGAAAAAAAAAG ---...........((((.....((..((((((.((((....)))).))...)))).))....)))).......... ( -13.90, z-score = 0.53, R) >droSec1.super_2 6244592 71 + 7591821 ---AAUAUAGAUAGCUUGCAAAAUCAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAAAACC--- ---..........(((((((......))).((((((((....)))))))).........))))...........--- ( -16.70, z-score = -1.38, R) >droSim1.chr3L 5773232 71 + 22553184 ---AGUAUAGAUAGCUUGCAAAAUCAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAAAACC--- ---..........(((((((......))).((((((((....)))))))).........))))...........--- ( -16.70, z-score = -0.95, R) >droMoj3.scaffold_6680 10182302 62 + 24764193 ----------AACAUUCAAAUGUUGCAACA-GCAACUUAAAGAUGUGGCAGCCAGCACAGCAUAGAAGCAGCU---- ----------.(((((.....(((((....-))))).....)))))(((.(....)...((......)).)))---- ( -11.80, z-score = 0.46, R) >consensus ___AGUAUAGAAAGCUUGCAAAAUGAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAAAAC____ ...............................(((((((....)))))))............................ ( -6.02 = -6.76 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:51 2011