| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,262,532 – 6,262,638 |
| Length | 106 |
| Max. P | 0.617548 |
| Location | 6,262,532 – 6,262,638 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Shannon entropy | 0.32311 |
| G+C content | 0.45678 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -15.51 |
| Energy contribution | -15.73 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6262532 106 - 24543557 CACCAGAUAUUGGCAUUGCAUUACAAUUAAGUAUCCGUUCAUUAGAACGCCAUAUAGA-CAACGCAA--AAAUAGCAGCCAAUCAGCACUUGAGACCACUUGAGAGCCA ........((((((..(((..(((......)))..(((((....))))).........-........--.....)))))))))..((.((..((....))..)).)).. ( -21.10, z-score = -2.42, R) >droSim1.chr3L 5756231 106 - 22553184 CACCAGAUAUUGGUAUUGCAUUACAAUUAAGUACCCGUUCAUUAGAACGCCACAUAGU-CACCGCAA--AAGUAGCAGCCAAUCAGCACUUGAGACCACUUGAGAGCCA ........((((((..(((..(((......)))..(((((....))))).........-........--.....)))))))))..((.((..((....))..)).)).. ( -19.60, z-score = -1.47, R) >droSec1.super_2 6228151 106 - 7591821 CACCAGAUAUUGGUAUUGCAUUACAAUGAAGUACCCGUUCAUUAGAACACCACAUAGU-CACCGCAA--AAGUAGCAGCCAAUCAGCACUUGAGACCACUUGAGAGCCA .....(((...((((((.(((....))).)))))).((((....))))........))-)...((..--.....)).........((.((..((....))..)).)).. ( -19.00, z-score = -1.14, R) >droYak2.chr3L 6843109 106 - 24197627 CACCAGAUAUUGGCAUUGCAUUACAAUUAAGUACCCGUUCAUUAGAACGCCAUAUAGA-CACCGUCG--AAGUUGCAGCCAAUCAGCACUUGAGAGCACUUGAGAGCCA ........((((((..((((..((...........(((((....))))).......((-(...))).--..))))))))))))..((.((..((....))..)).)).. ( -22.50, z-score = -1.76, R) >droEre2.scaffold_4784 8951619 106 - 25762168 CACCAGAUAUUGGCAUGGCAUUGCAAUUAAGUACCCGUUCAUUAGAACGCCAUCUAGA-CACCGCAG--AAGUUGCAGCCAAUCAGCACUUGGGAGCACUUGAGAGCCC ........(((((((((((..(((......)))...((((....))))))))).....-....((((--...)))).))))))..((.((..((....))..)).)).. ( -26.80, z-score = -1.06, R) >droAna3.scaffold_13337 2615854 107 + 23293914 GGCCAGAUAUUGGCAGUGCAUAACAAUUAACUUCCACUUCAUUAGAACUCUAUCCGGAGUGAGGCUGGCAGCUUCCAGCCAAUCAGCACUC-UUCCAAUCGGAGAGCU- .(((((...)))))(((((...............((((((..(((....)))...)))))).((((((......)))))).....))))).-((((....))))....- ( -33.90, z-score = -2.34, R) >consensus CACCAGAUAUUGGCAUUGCAUUACAAUUAAGUACCCGUUCAUUAGAACGCCAUAUAGA_CACCGCAA__AAGUAGCAGCCAAUCAGCACUUGAGACCACUUGAGAGCCA ........((((((..(((..(((......)))..(((((....))))).........................)))))))))..((.((((((....)))))).)).. (-15.51 = -15.73 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:49 2011