| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,211,049 – 6,211,161 |
| Length | 112 |
| Max. P | 0.817202 |
| Location | 6,211,049 – 6,211,161 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 133 |
| Reading direction | forward |
| Mean pairwise identity | 73.49 |
| Shannon entropy | 0.52322 |
| G+C content | 0.49592 |
| Mean single sequence MFE | -31.86 |
| Consensus MFE | -16.76 |
| Energy contribution | -16.72 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6211049 112 + 24543557 ----------UUCACUGUUCUUUUCGUAUUCCUUUGGUGG-AGCUCAUCCAACCGCACUGGAUGGCUCUUCUCGAGCAACUGAU------GGCACC----GCAGCGAGAAGUUUUCCUCGAGACCCCGAAAAA ----------..........((((((............((-(((.((((((.......)))))))))))(((((((.((((..(------.((...----...)).)..))))...)))))))...)))))). ( -34.90, z-score = -1.70, R) >droAna3.scaffold_13337 2571662 120 - 23293914 UUCACUGGUUCUUAAGGUCCUUUCACUUUUCCUUUCUAGG-AGCUCAUCCAACCGCACUGGAUGGCUCGUCGCGAGCAACUGAC------GGAACU----GCAGCGAGAAUCUUUCCUCGAUGCCCCGAAA-- (((...((((((...(((..........(((((....)))-))..((((((.......))))))(((((...))))).)))...------))))))----(((.((((........)))).)))...))).-- ( -33.10, z-score = -0.59, R) >droEre2.scaffold_4784 8907940 112 + 25762168 ----------UUCACUGUUCUUUUCGUAUUCCUUUGGGGG-AGCUCAUCCAACCGCACUGGAUGGCCCUUCUCGAGCAACUGAU------GGAACC----GCAGCGAGAAGUUUUCCUCGAGACCCCGAAAAA ----------..........((((((...((..(((((((-(((.((((((.......)))))))).(((((((.....(((.(------(....)----)))))))))))..))))))))))...)))))). ( -32.90, z-score = -0.58, R) >droYak2.chr3L 6800308 113 + 24197627 ----------UUCACUAUUAUUUUCGUAUUCCUUUGGGGGGAGCUCAUCCAACCGCACUGGAUGGCUCUUCUCGAGCAACUGAC------GGAACC----ACAGCGAGAAGUUUUCCUCGAGACCCCGAAAUA ----------......................((((((((((((.((((((.......)))))))))))(((((((.((((..(------(.....----....))...))))...))))))))))))))... ( -37.50, z-score = -2.78, R) >droSec1.super_2 6186338 112 + 7591821 ----------UUCACUGUUCUUUUCGUAUUCCUUUGGUAG-AGCUCAUCCAACCGCACUGGAUGGCUCUUCUCGAGCAACUGAU------GGAACC----GCAGCGAGAAGUUUUCCUCGAGACCCCGAAAAA ----------..........((((((............((-(((.((((((.......)))))))))))(((((((.((((..(------.(....----....).)..))))...)))))))...)))))). ( -31.10, z-score = -1.10, R) >droSim1.chr3L 5713692 112 + 22553184 ----------UUCACUGUUCUUUUCGUAUUCCUUUGGUGG-AGCUCAUCCAACCGCACUGGAUGGCUCUUCUCGAGCAACUGAU------GGAACC----GCAGCGAGAAGUUUUCCUCGAGACCCCGAAAAA ----------..........((((((............((-(((.((((((.......)))))))))))(((((((.((((..(------.(....----....).)..))))...)))))))...)))))). ( -31.10, z-score = -0.62, R) >droWil1.scaffold_180698 8122436 119 - 11422946 ----------UUCAAUUCGAUUCCUUCUUCUUGUU-CCAG-AGACCAUCCAACCGCACUGGAUGGCUCGUCGUGAGCAACUGAAUCCGAGUCCAUUUUUCGUAGCGGGAAGUUUUCCUCGAUCAUAAGAAC-- ----------......((((......(((((((((-((.(-((.(((((((.......))))))))))...).))))))(((....((((.......))))...)))))))......))))..........-- ( -30.60, z-score = -0.83, R) >droPer1.super_23 231635 106 + 1662726 --------CGGUUCGUUUUAUUUUGGUAUUUCUUUUAGAG-AGCCCAUCCAACCGCACUGGAUGGCUCCUCGCGAGCAAGUGAU------GUCACU----GCAGCGAGAAGUUUUCCUCGAGACC-------- --------.((((((.........((.(((((((...(((-((((.(((((.......))))))))).)))((..(((.(((..------..))))----)).)))))))))...)).))).)))-------- ( -33.50, z-score = -2.03, R) >dp4.chrXR_group3a 229010 106 + 1468910 --------CGGUUCGUUUUACUUUGGUAUUUCUUUCAGAG-AGCCCAUCCAACCGCACUGGAUGGCUCCUCGCGAGCAAGUGAU------GUCACU----GCAGCGAGAAGUUUUCCUCGAGACC-------- --------.((((((....((((................(-((((.(((((.......))))))))))(((((..(((.(((..------..))))----)).)))))))))......))).)))-------- ( -34.80, z-score = -1.96, R) >droVir3.scaffold_13049 10526294 107 + 25233164 -----------UCGAUUCUUAUUUA--UUUCU-UC-CCAG-AGCCCAUCCAACCGCACUGGAUGGCUCGUCGCGAGCAACUGAA-----CUUCAU-----GCAGUGAGAAGUUUUCCUCGGUGCCUCAAAAGA -----------.....((((.....--.....-..-...(-((((.(((((.......)))))))))).....(((..((((((-----((((..-----.......))))).....)))))..)))..)))) ( -26.40, z-score = -0.64, R) >droMoj3.scaffold_6680 14512693 109 - 24764193 -----------UCGAUUACAAUUCACUUUUCU-UU-UCAG-AGCCCAUCCAACCGCACUGGAUGGCUCGUCGCGAGCAACUGAA-----GUUCAU-----GCAGUGAGAAGUUUUCCUCGGUACCCCAAACAA -----------..((..((..((((((.....-((-((((-....((((((.......))))))(((((...)))))..)))))-----).....-----..))))))..))..))...((....))...... ( -27.20, z-score = -1.51, R) >droGri2.scaffold_15110 15847182 111 - 24565398 -----------UCGUCUAUUAUUUAUUUAUUUCUUACCAG-AGCCCAUCCAACCGCACUGGAUGGCUCGUCGCGAGCAACUGAA-----CUUCAU-----GCAGCGAGAAGUUUUCCUCGGUACCCAGACAAA -----------..((((..((......)).....((((.(-((((.(((((.......)))))))))).((((..(((..((..-----...)))-----)).))))............))))...))))... ( -29.20, z-score = -2.45, R) >consensus __________UUCACUUUUAUUUUCGUAUUCCUUUGGCAG_AGCCCAUCCAACCGCACUGGAUGGCUCGUCGCGAGCAACUGAU______GGCACC____GCAGCGAGAAGUUUUCCUCGAGACCCCGAAAAA ..........................................((.((((((.......))))))((((.....)))).......................))..((((........))))............. (-16.76 = -16.72 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:44 2011