| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,145,952 – 6,146,053 |
| Length | 101 |
| Max. P | 0.628568 |
| Location | 6,145,952 – 6,146,053 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.75 |
| Shannon entropy | 0.33851 |
| G+C content | 0.43411 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -18.56 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6145952 101 - 24543557 UGGCGACUUUGGUGCAACGCUGGCAAUUGAAAAACAGCACAAAAAAAACAAAAACAAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG--ACCGCCAGAGCUG ....(.((((((((...(((((((..................................((....))((((.....))))..)))))))--..))))))))).. ( -25.00, z-score = -1.73, R) >droSim1.chr3L 5646916 100 - 22553184 UGGCGACUUUGGUGCAACGCUGGCAAUUGAAAAACGGCACAAAAAC-AAAAAAACAAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG--ACCGCCAGAGCUG ....(.((((((((...(((((((......................-...........((....))((((.....))))..)))))))--..))))))))).. ( -25.00, z-score = -1.42, R) >droSec1.super_2 6090043 101 - 7591821 UGGCGACUUUGGUGCAACGCUGGCAAUUGAAAAACGGCACAAAAACUAAAAAAACAAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG--ACCGCCAGAGCUG ....(.((((((((...(((((((..................................((....))((((.....))))..)))))))--..))))))))).. ( -25.00, z-score = -1.50, R) >droYak2.chr3L 6734707 94 - 24197627 UGGCGACUUUGGUGCUAUGCUGGCAAUUGAAAAACAGUACAA-------AAAAAUUAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG--ACCGCCAGAGCUG ....(.((((((((...(((((((.((((.....))))....-------......((((((..............)))))))))))))--..))))))))).. ( -26.14, z-score = -2.45, R) >droEre2.scaffold_4784 8839789 94 - 25762168 UGGCGACUUUGGUGCAAUGCUGGCAAUUGAAAAACAGCACAA-------AAAAAUAAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG--ACCGCCAGAGCUG ....(.((((((((...(((((((..................-------.........((....))((((.....))))..)))))))--..))))))))).. ( -23.30, z-score = -1.26, R) >droAna3.scaffold_13337 2510372 85 + 23293914 ---------UGGUGCAUCUCUGCCAAUUGCAAAA-AACGUG--------GCAAAAAAAAUUGAAAUAGAGAAAAACAUUUAGCCGGUGGUGCUGCUGCAGCUU ---------.(.((((....(((.....)))...-...(..--------(((......((((...((((........))))..))))..)))..))))).).. ( -14.50, z-score = 1.73, R) >consensus UGGCGACUUUGGUGCAACGCUGGCAAUUGAAAAACAGCACAA_______AAAAACAAAAUGGAAAUAGUGGAAAACAUUUAGCCGGCG__ACCGCCAGAGCUG ......((((((((...(((((((..((....))......................(((((..............))))).)))))))....))))))))... (-18.56 = -18.92 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:41 2011